DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and Ir7b

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster


Alignment Length:694 Identity:116/694 - (16%)
Similarity:234/694 - (33%) Gaps:232/694 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 YQHAGTNITG---------LRLVSPDSEQVQEVAKALYESEEPFQNVSCPLTNSMALVYDGVQLL 312
            |.|..:..||         :.::.|::.|.:.:  .|.:|.|     ..|..:::..:.||:..|
  Fly    48 YTHTNSQSTGGHLEELLDQVLMIVPNNLQARRL--LLQQSME-----YKPYVHAVLALVDGLPSL 105

  Fly   313 AETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEG------LRTDFKLEV 371
            :..|..:.           :..|..:||: ||...|          |..|      ||..::|.|
  Fly   106 SAIYARIR-----------ATQDLSHTLI-YMSMPT----------DAYGEEMQATLRFLWRLSV 148

  Fly   372 IEL--------------------AVSGMQKIG------------QWSGEDGFQENRPAPAHSLEP 404
            :.:                    |:.|.|.|.            :|:.:|.|..           
  Fly   149 LNVGVVLRPPGDHILMVSYFPFSALHGCQVISANVVNRYQVGTKRWASQDYFPS----------- 202

  Fly   405 DMRSLVNKSFVVITAIS---EPYGMLKETSEKLEGNDQFEGFGIELIDELSKKLGFS--YTWRLQ 464
               .|.|....::|..:   .||.:.:.     :|:..|.|....|:..:::.|.|:  ..|..:
  Fly   203 ---KLGNFYGCLLTCATWEDMPYLVWRP-----DGSGSFVGIEGALLQFMAENLNFTVGLYWMNK 259

  Fly   465 EDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDF---TIPFMSLGIGILFRKP 526
            |:     :.....|...:..||....||..:..........|.:.:   |..|||   .|:....
  Fly   260 EE-----VLATFDESGRIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTN 316

  Fly   527 MKEPPKLFSFMS-PFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFA 590
            ::.....:..:| ||:..:|..:||..:...:.:.:|.|     |.:.:.....|        :.
  Fly   317 LQSAYSAYEKLSFPFTPLLWRAIGLVLILACLLLMLLVR-----WRHHHELPRNP--------YY 368

  Fly   591 NCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTP------- 648
            ..|..::|..|:  ....|:.:.:|.|..:|.|.||:|.|.|.:.:...|..::...|       
  Fly   369 ELLVLTMGGNLE--DRWVPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEV 431

  Fly   649 -----------INDA-------------------------DDLSKNKGGVNYGAKIGGAT----F 673
                       :|:|                         ..|::..|.   .|::...|    |
  Fly   432 LAQHFTIQLAEVNEARILASLPELRPEQLVYLEGSELQSFPALAQQSGS---SARVAILTPYEYF 493

  Fly   674 NFFKESNYPTYQRMY------------EFMRDNPQYMTNTNQEGVDRVENSNYAFLMESTTIEYI 726
            .:|::. :|..:|::            .::|.:...:...|::    :::::....:|..|.:|:
  Fly   494 GYFRKV-HPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQ----IQHAHTHGFLEHWTRQYV 553

  Fly   727 TERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSD 791
                       :.:|||...:|...:..| .||         .|:            .|..:.|:
  Fly   554 -----------SAVDEKDESVARIASTSY-STL---------DGI------------DGDPSLSE 585

  Fly   792 ADEDSGAV-----ALEISNLGGVFLVMGVGSFFGIFVSLLEMVL 830
            ::||....     .|.:..|..:|.::...:...:.|.:||::|
  Fly   586 SEEDQQVAPVRQNVLSMRELAALFWLILWANLGAVVVFVLELLL 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 32/180 (18%)
ANF_receptor 53..374 CDD:279440 26/131 (20%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 71/437 (16%)
Lig_chan 543..816 CDD:278489 52/336 (15%)
Ir7bNP_572410.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462867
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.