DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and GRID2

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_011530195.2 Gene:GRID2 / 2895 HGNCID:4576 Length:1035 Species:Homo sapiens


Alignment Length:872 Identity:233/872 - (26%)
Similarity:407/872 - (46%) Gaps:137/872 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 QLHGVSVSIEPGNSFETSKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFL--------- 121
            :..|.:.:..|..:.  .:|.|:::.|.::|:.......:|....|:.||..:|.|         
Human    76 ETRGTNTTASPATAL--PQKTCELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGT 138

  Fly   122 ----------DTRWDFGAQLPTINLHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTVRELL 176
                      :...|:     |:::.| |..|...:..:|....|:.|.|.|:|...:..::|.|
Human   139 PRSGCGLTRSNRNDDY-----TLSVRP-PVYLHDVILRVVTEYAWQKFIIFYDSEYDIRGIQEFL 197

  Fly   177 QMYGTAGPTVTVRRYELDLN---------------GNYRNVLRRIRNADDFSFVVVGSMATLPEF 226
            ......|..|.:::.|.::|               ..||:.|||.        ::|.:.||...|
Human   198 DKVSQQGMDVALQKVENNINKMITTLFDTMRIEELNRYRDTLRRA--------ILVMNPATAKSF 254

  Fly   227 FKQAQQVGLVTSDYRYIIGNLDWHTMDL-EPYQHAGTNITGLRLVSPDSEQVQE--------VAK 282
            ..:..:..||..|..:||.|.:.:.:|: |..:.:...:|.:|...|..:.:.:        ::.
Human   255 ITEVVETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQNISQRCFRGNHRISS 319

  Fly   283 ALYESEEPF-QNVSCPLTNSMALVYDGVQLLAETY-KHVNFRP----VALSC--NDDSAWDKGYT 339
            .|.:.::|| ||:..    |...:||.|.|||..: |.:..|.    .:|||  .:...|..|.:
Human   320 TLCDPKDPFAQNMEI----SNLYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRS 380

  Fly   340 LVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVI------ELAVSGMQK----------------I 382
            ::..:|...::||||.:.|...|...:...|::      ||. .|::|                :
Human   381 MLETIKKGGVSGLTGELEFGENGGNPNVHFEILGTNYGEELG-RGVRKNERIRPQGSTGKIWPQL 444

  Fly   383 GQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYGMLKETSEKLEGN-DQFEGFGIE 446
            |.|:...|.  |.......||.:||.:|.:   |:|.:.||:.|:   ||.:.|. .:::||.|:
Human   445 GCWNPVTGL--NGSLTDKKLENNMRGVVLR---VVTVLEEPFVMV---SENVLGKPKKYQGFSID 501

  Fly   447 LIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDFT 511
            ::|.||..|||:|...:..|:|||. ..:.|.|||::.|::..|||:||:.||:|.:||:.||||
Human   502 VLDALSNYLGFNYEIYVAPDHKYGS-PQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFT 565

  Fly   512 IPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPC 576
            ..:|...:|:|.|:..| ...:|:.::||...:|..:....:.|.:.:::|      .|.|| |.
Human   566 TRYMDYSVGVLLRRAEK-TVDMFACLAPFDLSLWACIAGTVLLVGLLVYLL------NWLNP-PR 622

  Fly   577 IEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLT 641
            ::..:....  :..|.:||..|:.:|||.|:.....:||.:..:||.|.||::||||||||||||
Human   623 LQMGSMTST--TLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLT 685

  Fly   642 VESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQR--MYEFM-----RDN-PQYM 698
            :..:.:.|....|||| :..:.||..:..|.:...:......::|  ||..|     |.| .:..
Human   686 ITRIESSIQSLQDLSK-QTEIPYGTVLDSAVYEHVRMKGLNPFERDSMYSQMWRMINRSNGSENN 749

  Fly   699 TNTNQEGVDRVENSNYAFLMESTTIEY--ITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQ 761
            ...:|.|:.:|:..||||:.::..:||  |.:..|:...:|..:.::|||||::...||||..||
Human   750 VLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTIGNTVADRGYGIALQHGSPYRDVFSQ 814

  Fly   762 AVLEMQEQGLLTKMKTKWWQEKRGGGAC---SDADEDSGAVALEISNLGGVFLVMGVGSFFGIFV 823
            .:||:|:.|.:..:|.|||.:   .|.|   |..|......||:|.:..|||.::..|.....|:
Human   815 RILELQQNGDMDILKHKWWPK---NGQCDLYSSVDTKQKGGALDIKSFAGVFCILAAGIVLSCFI 876

  Fly   824 SLLEMVLG------VKERSDENQVSFK 844
            ::||....      |..:.|:.::..:
Human   877 AMLETWWNKRKGSRVPSKEDDKEIDLE 903

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 82/397 (21%)
ANF_receptor 53..374 CDD:279440 76/364 (21%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 127/380 (33%)
Lig_chan 543..816 CDD:278489 89/285 (31%)
GRID2XP_011530195.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155947
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.840

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