DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and Grin2d

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_038951440.1 Gene:Grin2d / 24412 RGDID:2740 Length:1334 Species:Rattus norvegicus


Alignment Length:915 Identity:201/915 - (21%)
Similarity:336/915 - (36%) Gaps:241/915 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 NLVAVF-GPT-SNLAARHAMSICDAKELPFLDTRWDFGAQLPTINLHPHPATL---GVALRDMVV 152
            |:..|| ||. :..|||...::..|...|.||.|               |..|   |...|.:|:
  Rat    49 NVALVFSGPAYAAEAARLGPAVAAAVRSPGLDVR---------------PVALVLNGSDPRSLVL 98

  Fly   153 AL-----GWESFTIIYESGEYLPTVRELLQMYG--TAGPTVTVRRYELDLNGNYRNVLRRIRNAD 210
            .|     |.....:::|.....|.|..:|....  |:.|.|.|       :|....||.......
  Rat    99 QLCDLLSGLRVHGVVFEDDSRAPAVAPILDFLSAQTSLPIVAV-------HGGAALVLTPKEKGS 156

  Fly   211 DFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDWHTM----------------------- 252
              :|:.:||...     :|.|.:..|..:|       ||.:.                       
  Rat   157 --TFLQLGSSTE-----QQLQVIFEVLEEY-------DWTSFVAVTTRAPGHRAFLSYIEVLTDG 207

  Fly   253 DLEPYQH---------AGTNITG---------LRLVSPDSEQVQEVAKALYES------------ 287
            .|..::|         ||..:.|         :||:....|:.:.|.:|..|:            
  Rat   208 SLVGWEHRGALTLDPGAGEAVLGAQLRSVSAQIRLLFCAREEAEPVFRAAEEAGLTGPGYVWFMV 272

  Fly   288 -------------EEPF---------------------QNVSCPLTNSMALVYDGVQLLAETYKH 318
                         .||.                     .:::..:...:|:|..|.|.|...|  
  Rat   273 GPQLAGGGGSGVPGEPLLLPGGSPLPAGLFAVRSAGWRDDLARRVAAGVAVVARGAQALLRDY-- 335

  Fly   319 VNFRP-VALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVIELAVS-GMQK 381
             .|.| :...|...:...:|.:|..|..::|.:  .....|:.:|...:..|.||.|... ..:.
  Rat   336 -GFLPELGHDCRTQNRTHRGESLHRYFMNITWD--NRDYSFNEDGFLVNPSLVVISLTRDRTWEV 397

  Fly   382 IGQWSGEDGFQENRP---APAHSLEP-------DMRSLVNKSFVVITAISEPYGMLKET--SEKL 434
            :|.|. :...:...|   .....|:|       .:.:|..:.||::    ||...:..|  .:.:
  Rat   398 VGSWE-QQTLRLKY
PLWSRYGRFLQPVDDTQHLTVATLEERPFVIV----EPADPISGTCIRDSV 457

  Fly   435 EGNDQF------------------EGFGIELIDELSKKLGFSYTWRLQEDNKYG-GIDPKTGEWN 480
            ....|.                  :||.|:::..|:..:||||...|..:.|:| .||   |.||
  Rat   458 PCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKID---GVWN 519

  Fly   481 GMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRKP--MKEPPKLFSF------M 537
            ||:.|:...||||.|..||:..||...|||::||:..||.::..:.  ...|....:|      |
  Rat   520 GMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLAFAWLTPPM 584

  Fly   538 S--PFSGEVWLWLGLAYMG-VSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGA 599
            |  |:|..||:.:.:..:. |::::|:...|||..::......:.|.  .:.|:....:|. :.|
  Rat   585 SPEPYSPAVWVMMFVMCLTVVAVTVFIFEYLSPVGYNRSLATGKRPG--GSTFTIGKSIWL-LWA 646

  Fly   600 LLQQGSELA--PKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGV 662
            |:...|...  |:..:::.:...|.||.:|.::|||||||||:..|..|..::...|....:...
  Rat   647 LVFNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDRKFQRPQE 711

  Fly   663 NY-----GAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNTNQEGVDRVENSNY-------- 714
            .|     |....|:|....: ||||          |...||...||   .|||.:..        
  Rat   712 QYPPLKFGTVPNGSTEKNIR-SNYP----------DMHSYMVRYNQ---PRVEEALTQLKAGKLD 762

  Fly   715 AFLMESTTIEYIT--ERRCTLTQVGA--LLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKM 775
            ||:.::..:.|:.  :..|.|..:|:  :....|||||:.|...::..:..|:|:......:..:
  Rat   763 AFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEML 827

  Fly   776 KTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMV--------LGV 832
            :..|.     .|.|.:...:..:..|:|.|:.|||.::.|.....:.|...|.:        ||.
  Rat   828 ERLWL-----SGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCLGP 887

  Fly   833 KERSD 837
            ..|.|
  Rat   888 THRMD 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 74/398 (19%)
ANF_receptor 53..374 CDD:279440 71/380 (19%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 108/420 (26%)
Lig_chan 543..816 CDD:278489 69/292 (24%)
Grin2dXP_038951440.1 PBP1_iGluR_NMDA_NR2 46..410 CDD:380601 74/402 (18%)
PBP2_iGluR_NMDA_Nr2 427..838 CDD:270436 111/439 (25%)
PHA03307 <1125..>1312 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349873
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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