Sequence 1: | NP_001262788.1 | Gene: | Grik / 42476 | FlyBaseID: | FBgn0038840 | Length: | 907 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_036707.3 | Gene: | Grin2c / 24411 | RGDID: | 2739 | Length: | 1250 | Species: | Rattus norvegicus |
Alignment Length: | 996 | Identity: | 222/996 - (22%) |
---|---|---|---|
Similarity: | 387/996 - (38%) | Gaps: | 209/996 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 ILTSLLLAFP---GCRGER-TNVGLVYENTDPDLEKIFHLAISKANEENEDLQLHGVSVSIEPGN 78
Fly 79 SFETSKKLCKMLRQNLVAVFGPTSNLAAR-HAMSICD-------AKELPFLDTRWDFGAQLPTIN 135
Fly 136 LHPHPAT-------------LGVALRDMVVAL-------GWESFTII--YESGE--YLPTVRELL 176
Fly 177 QMYGTAGPTVTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYR 241
Fly 242 YIIGNLDWHTMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYESEEPFQNVSCPLTNSMALVY 306
Fly 307 DGVQLLA--------------------------------ETYKHVNFRPVALSCNDDSAWDKGYT 339
Fly 340 LVNYMKSLTLN-----GLTGPIRFDYEGLRTDFKLEVIELAVSGMQKIGQWSGEDGFQENRPAPA 399
Fly 400 HSLEP--DMR-----SLVNKSFVVITAISEP--YGMLKETSE-KLEGNDQF-------------E 441
Fly 442 GFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERES 506
Fly 507 GVDFTIPFMSLGIGILF-RKPMKEPPKLFSFMSPFSGEVWLWLGLAYMG-VSISMFVLGRLSPAE 569
Fly 570 WDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELA--PKAYSTRAVAASWWFFTLILVSSY 632
Fly 633 TANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQY 697
Fly 698 MTNTNQEGVDRVENSNY-----AFLMESTTIEYIT--ERRCTLTQVGA--LLDEKGYGIAMRKNW 753
Fly 754 PYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSF 818
Fly 819 FGIFVSLLEMVLGVKER---SDENQVSFKTELLDEIRFILQCSGNTKAVKYPKNSSRSNASSKSK 880
Fly 881 GSSM--SVDSLPEDTSEADAS 899 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Grik | NP_001262788.1 | PBP1_iGluR_Kainate | 37..391 | CDD:107377 | 77/422 (18%) |
ANF_receptor | 53..374 | CDD:279440 | 72/389 (19%) | ||
Periplasmic_Binding_Protein_Type_2 | 411..781 | CDD:304360 | 104/398 (26%) | ||
Lig_chan | 543..816 | CDD:278489 | 68/284 (24%) | ||
Grin2c | NP_036707.3 | PBP1_iGluR_NMDA_NR2 | 41..397 | CDD:380601 | 76/418 (18%) |
PBP2_iGluR_NMDA_Nr2 | 413..813 | CDD:270436 | 108/418 (26%) | ||
NMDAR2_C | 850..>925 | CDD:402274 | 14/77 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166349885 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |