DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and glr-9

DIOPT Version :10

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_502564.2 Gene:glr-9 / 189098 WormBaseID:WBGene00012190 Length:487 Species:Caenorhabditis elegans


Alignment Length:415 Identity:82/415 - (19%)
Similarity:156/415 - (37%) Gaps:59/415 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 FEGFGIELIDELSKKLGFSYTWRL---QEDNKYGGID----PKTGEWNGMLREIIDSRADMGITD 497
            |.|:.:|::    |.:..|..|.:   ......||:|    .|.|.|:|:|..:.:..||.....
 Worm    36 FPGWTMEVL----KMITDSLKWEIIPVVTPTIVGGLDWGTLQKNGTWSGVLGYLQNGTADAVALM 96

  Fly   498 LTMTSERESGVDFTIPFMSLGIGILFRKPMKE-PPKLFSFMSPFSGEVWLWL----------GLA 551
            ...|..|....:::.|..::....:.||..:. ...|::...|||.||||.|          .:|
 Worm    97 YQKTDTRNEYFEYSYPVTNVQPVFVARKKTETLGSVLWNAFKPFSVEVWLCLLASLVLNLLIMIA 161

  Fly   552 YMGVSISMFVLGRLSPAE--WDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYST 614
            ..|:...:....|..|.|  |......::|.::....::.:..:...:.||||.|          
 Worm   162 ISGIEFKLLFRSRFRPWEMLWHVVQLQLDEKSDDMLFYTLSGNIVLFVFALLQSG---------- 216

  Fly   615 RAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAK---IGGATFNFF 676
                        ||:..|...|...|...:...|..:||::.|..|...|...   :|...|:..
 Worm   217 ------------ILIEVYKGMLLTALITSNGDNPFANADEMIKLIGEKKYHLTTNYMGNWYFDDL 269

  Fly   677 KESNYPTYQRMYEFMRDNPQYMTNTNQEGVDRVENSNYAF-LMESTTIEYITERRCTLTQVGALL 740
            :.|:...:..:......||.....:....:|.|::..|.: :.:.:....:::.||....|...:
 Worm   270 QHSDQQHFVSLRAATASNPVIPAASVSAALDLVDSGKYIYPIQQDSLAMQMSKERCNYVYVSDGM 334

  Fly   741 DEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQE--KRGGGACSDADEDSGAVA--- 800
            .:........||:......:..::  ..|..:.:...|::.|  |.|.....:..|.:.:.|   
 Worm   335 PQVSSFFVFTKNFSGIAEFNTQII--MNQAFIQRTFNKYFNEGFKLGFIPKCEVTEPTASDATKP 397

  Fly   801 LEISNLGGVFLV--MGVGSFFGIFV 823
            |:|.::.|||.:  :||.:...:||
 Worm   398 LDIESVIGVFTIGALGVAASLMVFV 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 35..395 CDD:380605
Periplasmic_Binding_Protein_Type_2 411..781 CDD:473866 68/364 (19%)
glr-9NP_502564.2 HisJ 38..>132 CDD:440596 20/97 (21%)
Blue background indicates that the domain is not in the aligned region.

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