DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and nmr-1

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_495033.2 Gene:nmr-1 / 173929 WormBaseID:WBGene00003774 Length:1025 Species:Caenorhabditis elegans


Alignment Length:895 Identity:216/895 - (24%)
Similarity:365/895 - (40%) Gaps:173/895 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LQL-----HGVSVSIEPGNSFETSKKLCKMLRQNLVAVFGPTSNLAARHAMS--ICDAKELPFLD 122
            |||     :.|||.|....:.||.|:|...:....|.|||.||.......:|  ..|||.   .|
 Worm    13 LQLGYTIDYKVSVLIVSEPNQETFKELKVSVTAAFVEVFGSTSYHLGNDTISAAFVDAKS---GD 74

  Fly   123 TRWDFGAQLPTINLHPHP---------ATLGVALRDMVVALGWESFTIIYESGEYLPTVRELLQ- 177
            .|.:....:....:..|.         .|......|:|.:   .::|:.:..   ||.|..::: 
 Worm    75 NRLELTQDIVCSQMLNHSLASVIFSPLLTSSSRFIDLVTS---SAYTLSFYK---LPVVGVMVRD 133

  Fly   178 -------MYGT-AGPTVTVRR-----YELDLNGNYRNV----LRRIRNADDFSFVVVGSMATLPE 225
                   :|.| ..||..:..     ..:.|:..||.|    ::|..|||.|          :.|
 Worm   134 AEFSKKNIYPTFVRPTAPLSDEAFVFLHMLLSLKYRQVVVLSVKRDINADQF----------VEE 188

  Fly   226 FFKQAQQVGLVTSDYRYIIGNLDWHTMD--LEPYQHAGTNITGLRLVSPDSEQVQEVA------- 281
            |.|:..:..::..  |||...|:.:..|  .|.::...:||..|.....|:.::...|       
 Worm   189 FEKRRVEFKIIVQ--RYIEVELNENLNDTLAESFEEVTSNIIVLFAKKDDAVRIFANAGDLTGKG 251

  Fly   282 KALYESEE-------PFQNVSC--------PLTNSMALVYDGVQLLAETYKHVNFRPVALSCNDD 331
            |....||.       |..::.|        .|.:|.:::...::.:....|...|.||  .|:.|
 Worm   252 KVWIVSESAGEAHNVPNGSLGCRLGQTAFSVLRDSFSILKSAMETIFRESKIDIFPPV--ECDRD 314

  Fly   332 SA---WD--KGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVIELAVSGMQKIGQWSG---- 387
            |.   |:  :...|:|.:...:    |..:.|:.:..|...:.::|...:...| :|...|    
 Worm   315 SVDAEWNSLQAPALLNEICGTS----TSRVHFNDKCERIGVEYDIINFHMERKQ-VGNMVGDILR 374

  Fly   388 --EDGFQ---ENRPAPAHSLEPDMR--SLVNKSFVVITAISEPYGMLKETSE------------- 432
              ||..:   ..:|... ||...:|  ::.:..||..|.|..|    .:.:|             
 Worm   375 LDEDSIEWAGGTKPLEI-SLPKHLRVVTVADPPFVYTTPIGSP----SQCAELGNTVVEWSIFDK 434

  Fly   433 ------------KLEGNDQF---EGFGIELIDELS-----KKLGFSYTWRLQEDNKYGGIDPK-- 475
                        .||.:.::   .|..|:|:..||     ..:..|:|:.|..:..||.:...  
 Worm   435 IVVSGPWYSCPLTLENSTEYFCCAGLAIDLLSNLSLPEANNSIDTSFTFSLHLNESYGVVQASET 499

  Fly   476 TG-EWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSP 539
            || ..:|::.|:....|||.|..:|:..|||..||||.|::..||.||.:...::.| :.||:.|
 Worm   500 TGITISGVIGELDGDTADMAIGGITINPERERIVDFTEPWLYHGIRILEKNIPRDSP-MQSFLQP 563

  Fly   540 FSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPCIEE-PTELENQF------------SFAN 591
            ....:|..|.::.:.|.::::.|...||  ::..|...:| ..:|:.:|            :|..
 Worm   564 LQSSLWTALFISVILVGLAIYCLDFKSP--FERFYQADKEMEQDLKKEFELWIGKDADENVNFGE 626

  Fly   592 CLWFSIGALLQQG-SELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTV---ESLVTPINDA 652
            .:||..|.||..| ||..|::.|.|.:...|..|.:|:|:||||||||||.:   |..:|.:.| 
 Worm   627 AMWFVWGVLLNSGVSEKTPRSCSARVLGIVWCGFCMIMVASYTANLAAFLVLDQPEKGLTGVTD- 690

  Fly   653 DDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNTNQEGVDRVENSNY-AF 716
            ..|.......::|..:....:.:||.     :..:....|....:......|.|..:.|.:. ||
 Worm   691 PRLRNPSANFSFGTVLNSNVYQYFKR-----HVELSSMFRKMEPHNVRRASEAVHSLLNGSLDAF 750

  Fly   717 LMESTTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQ 781
            :.:||.:|:...|.|.|...|:|.....|||.::||.|:...::.|:|.|.|.|::.|:..||..
 Worm   751 IWDSTRLEFEAARHCELRTRGSLFGRSAYGIGLQKNSPWTPHITSAILRMSESGVMEKLDQKWID 815

  Fly   782 EKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMVLG 831
              |||..|. .:.......|.:.|:..:|:::..|...|||:|.:|:..|
 Worm   816 --RGGPNCV-VEAHKSPARLGLVNMKDIFILVSSGVALGIFLSFVEVSYG 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 84/394 (21%)
ANF_receptor 53..374 CDD:279440 79/371 (21%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 114/423 (27%)
Lig_chan 543..816 CDD:278489 78/290 (27%)
nmr-1NP_495033.2 Periplasmic_Binding_Protein_type1 19..384 CDD:385651 81/392 (21%)
PBP2_iGluR_NMDA_Nr1 394..822 CDD:270437 118/442 (27%)
Lig_chan 567..844 CDD:365843 78/287 (27%)
LITAF 949..1017 CDD:197841
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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