Sequence 1: | NP_001262788.1 | Gene: | Grik / 42476 | FlyBaseID: | FBgn0038840 | Length: | 907 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_579842.2 | Gene: | Grin3b / 170796 | RGDID: | 621705 | Length: | 1002 | Species: | Rattus norvegicus |
Alignment Length: | 938 | Identity: | 207/938 - (22%) |
---|---|---|---|
Similarity: | 347/938 - (36%) | Gaps: | 219/938 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 90 LRQNLVAVFGPTSNLAARHAMSICDAKELPFLDTRWDFGAQLPTINLHPHPA------TLGVALR 148
Fly 149 DMVVALGWES-FTIIYESGEYLPTVRELLQMYGTAGPTVTVRRYELDLNGNYRNVLRRIRNADDF 212
Fly 213 SFVVVGSMATL--------PEFFKQAQQVGLVTSDYR---YIIGNLDWHTMDLEPYQHAGTNITG 266
Fly 267 LRLVSPDSEQVQEVAKALYESEE-----PFQNVSCPLT--------------NSM-ALVYDGVQL 311
Fly 312 LAETYKHV-------NFRPVALSCND---DSAWDKGYTLVNYMKSLTLNGLTGPI---------- 356
Fly 357 --RFDYEGLRTDFKLEVIELAVSGMQKIGQW-SGEDGFQENR-----PAPAHS-LEPDMRSLVNK 412
Fly 413 SFVVITAISEPYGMLKETSEKLEG-------------NDQFE----------------------G 442
Fly 443 FGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESG 507
Fly 508 VDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGR-LSPAEWD 571
Fly 572 NPYPCIEEPTELENQFSFANCLWFSIGALL-QQGSELAPKAYSTRAVAASWWFFTLILVSSYTAN 635
Fly 636 LAAFLTVESLVTPINDADD--LSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYM 698
Fly 699 TNTNQEGVDRVENSN---YAFLMESTTIEY--ITERRCTLTQVGALLDEKGYGIAMRKNWPYRDT 758
Fly 759 LSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFV 823
Fly 824 SLLEMVLGVKERSDENQVSFKTELLDEIRFILQCSGNTKAVKY---------------PKNSSRS 873
Fly 874 NASSKSKGSSMSVDSLPEDTSEADASGK 901 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Grik | NP_001262788.1 | PBP1_iGluR_Kainate | 37..391 | CDD:107377 | 72/361 (20%) |
ANF_receptor | 53..374 | CDD:279440 | 68/343 (20%) | ||
Periplasmic_Binding_Protein_Type_2 | 411..781 | CDD:304360 | 100/413 (24%) | ||
Lig_chan | 543..816 | CDD:278489 | 64/281 (23%) | ||
Grin3b | NP_579842.2 | PBP1_iGluR_NMDA_NR3 | 21..405 | CDD:107372 | 74/370 (20%) |
PBP2_iGluR_NMDA_Nr3 | 414..808 | CDD:270438 | 101/420 (24%) | ||
Lig_chan | 576..842 | CDD:278489 | 71/295 (24%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 882..910 | 6/34 (18%) | |||
Involved in the trafficking and surface expression of NMDARs. /evidence=ECO:0000250 | 951..984 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166349882 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |