DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Grik3

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:885 Identity:339/885 - (38%)
Similarity:512/885 - (57%) Gaps:37/885 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GFILTSLLLAFPGCRG--ERTNVGLVYENTD-PDL------EKIFHLAISKANEENEDLQLHGVS 71
            ||::.:..:  |..||  ....:|.::|..| |:.      |..|..:.:..|.....|....::
Mouse    18 GFLVCAFWI--PDSRGMPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLT 80

  Fly    72 VSIEP---GNSFETSKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLDTRWDF----GA 129
            ..|:.   .:|||.:||.|..|...:||:|||:.........|||:|.|:|.:..||..    ..
Mouse    81 YDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNK 145

  Fly   130 QLPTINLHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTVRELLQMYGTAGPTVTVRRYELD 194
            ....:||:|..|:|..|:.|:|.:|.|.|.|::|:....|..::||:.........:.:|:..:|
Mouse   146 DTFYVNLYPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPID 210

  Fly   195 LNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDWHTMDLEPYQH 259
             :.:.|.:|:.::...:|..:...|.....:..|||..:|::|..|.:|...||.:.:|||||::
Mouse   211 -SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRY 274

  Fly   260 AGTNITGLRLVSPDSEQVQE-VAKALYESEEPFQNVSCPLTNSM-----ALVYDGVQLLAETYKH 318
            :|.|:||.|:::.|:..|.. |.|...|..:........|.:.:     ||:||.|.:::..|:.
Mouse   275 SGVNLTGFRILNVDNPHVSAIVEKWAMERLQAAPRAESGLLDGVMMTDAALLYDAVHIVSVCYQR 339

  Fly   319 VNFRPV-ALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFD-YEGLRTDFKLEVIELAVSGMQK 381
            .....| :|.|:...||..|...:|::|.....||||.|.|: ..||||||.|::|.|...|::|
Mouse   340 APQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEK 404

  Fly   382 IGQWSGEDGFQENRPAPAHSLEPDMR-SLVNKSFVVITAISEPYGMLKETSEKLEGNDQFEGFGI 445
            :|.||..||.  |....|....|::. ||.|:|.:|.|.:.||:.|.:::...|.|||:|||:.|
Mouse   405 VGVWSPADGL--NITEVAKGRGPNVTDSLTNRSLIVTTVLEEPFVMFRKSDRTLYGNDRFEGYCI 467

  Fly   446 ELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDF 510
            :|:.||:..|||||..||.||.|||..|.| |:||||::|:||.:||:.:..||:|..||..:||
Mouse   468 DLLKELAHILGFSYEIRLVEDGKYGAQDDK-GQWNGMVKELIDHKADLAVAPLTITHVREKAIDF 531

  Fly   511 TIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYP 575
            :.|||:||:.||:|||....|.:|||::|.|.::|:::.|||:|||..:||:.|.||.||.:.:|
Mouse   532 SKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHP 596

  Fly   576 CIEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFL 640
            |......:||.|:..|..||.:|:|:||||||.|||.|||.:...|||||||::|||||||||||
Mouse   597 CNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFL 661

  Fly   641 TVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNTNQEG 705
            |||.:.:||:.||||:| :..:.|||...|||..|||:|...|:::|:.||...|..:...|:||
Mouse   662 TVERMESPIDSADDLAK-QTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEG 725

  Fly   706 VDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQG 770
            :.|...::||.|||||||||||:|.|.|||:|.|:|.|||||......||||.::.|:|::||:.
Mouse   726 IQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEED 790

  Fly   771 LLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMVLGVKER 835
            .|..||.|||   ||.| |.: :|:..|.||.|..:||:|:|:..|....:.|::.|.:..:::.
Mouse   791 KLHIMKEKWW---RGSG-CPE-EENKEASALGIQKIGGIFIVLAAGLVLSVLVAVGEFIYKLRKT 850

  Fly   836 SDENQVSFKTELLDEIRFILQCSGNTKAVKYPKNSSRSNA 875
            ::..|.||.:.:.|||||.|.|....|....|....:::|
Mouse   851 AEREQRSFCSTVADEIRFSLTCQRRLKHKPQPPMMVKTDA 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 111/375 (30%)
ANF_receptor 53..374 CDD:279440 98/335 (29%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 187/369 (51%)
Lig_chan 543..816 CDD:278489 136/272 (50%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 113/385 (29%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 188/372 (51%)
Glutamate binding. /evidence=ECO:0000250 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846395
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.750

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