DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and Grik1

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_006522977.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:960 Identity:339/960 - (35%)
Similarity:520/960 - (54%) Gaps:119/960 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWFVKMISTEASFPLGFILTSLLLAFPGCRGERTNVGLVY---ENTDPDLEKI-FHLAISKANEE 61
            :|     :.:.|:.|.:.|..:|   |....:...:|.::   ||...::|:: |..|::..|..
Mouse    12 LW-----TRDTSWTLLYFLCYIL---PQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRN 68

  Fly    62 NEDLQLHGVSVSIEPGN---SFETSKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLDT 123
            ...:....::..|:..|   |||.|::.|..|...:.|:|||:.:.:.....|||:|.|:|.:.|
Mouse    69 RTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQT 133

  Fly   124 RWDF----GAQLPTINLHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTVRELLQMYGTAGP 184
            ||..    ...|..|||:|..|.:..|:.|:|:...|::.|::||....|..::||::     .|
Mouse   134 RWKHPSVDNRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIK-----AP 193

  Fly   185 TVTVRRYELDL--------NGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYR 241
            :    ||.:.:        |.:.:.:|:.::...:|..:...|..|..|..||...:|::|..|.
Mouse   194 S----RYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYH 254

  Fly   242 YIIGNLDWHTMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYESEEPFQNVSCP--------L 298
            |....||...:|||.|:::|.|:||.||::.|:..|..:.:..  |.|..|....|        :
Mouse   255 YFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKW--SMERLQAPPRPETGLLDGVM 317

  Fly   299 TNSMALVYDGVQLLA-ETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFD-YE 361
            |...||:||.|.::| .:::.......:|.|:....|..|...:|.:|....:||||.|.|: .:
Mouse   318 TTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTD 382

  Fly   362 GLRTDFKLEVIELAVSGMQ---------------KIGQWSGEDGF---QENRPAPAHSLEPDMRS 408
            |||.||.|::|.|...|.:               |||.|:...|.   ..||....:..:    |
Mouse   383 GLRKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITD----S 443

  Fly   409 LVNKSFVVITAISEPYGMLKETSEKLEGNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKYGGID 473
            |.|::.:|.|.:.|||.|.:::.:.|.|||:|||:.::|:.|||..|||.|..:|..|.|||..:
Mouse   444 LANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQN 508

  Fly   474 PKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMS 538
            .| ||||||::|:||.|||:.:..||:|..||..:||:.|||:|||.||:|||....|.:|||::
Mouse   509 DK-GEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLN 572

  Fly   539 PFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQQ 603
            |.|.::|:::.||.:|||..:||:.|.:|.||.||:||..:...:||.|:..|..||.:|||:||
Mouse   573 PLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQ 637

  Fly   604 GSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKI 668
            ||||.|||.|||.|...|||||||::||||||||||||||.:.:||:.||||:| :..:.|||..
Mouse   638 GSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK-QTKIEYGAVR 701

  Fly   669 GGATFNFFKESNYPTYQRMYEFMRDNPQ-YMTNTNQEGVDRVENSNYAFLMESTTIEYITERRCT 732
            .|:|..|||:|...||::|:.||....| .:...:.||:.||..::||.|||||:|||:|:|.|.
Mouse   702 DGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCN 766

  Fly   733 LTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSG 797
            |||:|.|:|.||||:......||||.::.|:|::||:|.|..||.|||   ||.| |.:.|... 
Mouse   767 LTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWW---RGNG-CPEEDSKE- 826

  Fly   798 AVALEISNLGGVFLVMGVGSFFGIFVSLLEMVLGVKERSD--------------ENQVSF---KT 845
            |.||.:.|:||:|:|:..|....:||::.|.:...::.:|              .|:|.|   ||
Mouse   827 ASALGVENIGGIFIVLAAGLVLSVFVAIGEFIYKSRKNNDIEQKGKSSRLRFYFRNKVRFHGSKT 891

  Fly   846 E------------LLDEIRFILQCSGNTKAVKYPKNSSRSNASSKSKGSS 883
            |            :::|:...|            ||..:....|::||.|
Mouse   892 ESLGVEKCLSFNAIMEELGISL------------KNQKKLKKKSRTKGKS 929

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 109/397 (27%)
ANF_receptor 53..374 CDD:279440 98/345 (28%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 186/370 (50%)
Lig_chan 543..816 CDD:278489 136/273 (50%)
Grik1XP_006522977.1 PBP1_iGluR_Kainate 38..431 CDD:380605 110/403 (27%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:389745 187/373 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846386
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.760

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