DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Ir8a

DIOPT Version :10

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_061519126.1 Gene:Ir8a / 1272638 VectorBaseID:AGAMI1_006137 Length:392 Species:Anopheles gambiae


Alignment Length:345 Identity:83/345 - (24%)
Similarity:153/345 - (44%) Gaps:58/345 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   586 QFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPIN 650
            :|:.....||::.:...||...||||.|.|.:.|::|.|.:::::::|||||||||||.:.||:.
Mosquito    19 KFTLKESFWFALTSFTPQGGGEAPKALSGRTLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQ 83

  Fly   651 DADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMR--------DNPQYM--------- 698
            ..:.||: :..:.|.......|.::|:... .....:|:..|        |..||.         
Mosquito    84 SLEQLSR-QSRIKYTVVKDSDTHDYFRNMK-NAEDVLYQMWRNLTLSSGNDQAQYRVWDYPIKEQ 146

  Fly   699 -------------TNTNQEGVDRVE---NSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGI 747
                         ..|..||..||.   ::::||:.:|..|.|...|.|..|:||.:..|:.|||
Mosquito   147 YINILSAIESANPVATAAEGFRRVNERLDADFAFIHDSAEIRYEISRNCNFTEVGEVFAEQPYGI 211

  Fly   748 AMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLV 812
            |:::....:|.||..:||:|::.....:..|:|... ....|.:.|:..|   :.:.:|||||:.
Mosquito   212 AVQQGSHLQDELSYFILELQKERYFESLTAKFWNNS-ARSQCPNTDDSEG---ITLESLGGVFIA 272

  Fly   813 MGVGSFFGIFVSLLEMVLGVKERSDEN-------------------QVSFKTELLDEIRFILQCS 858
            ..||....:...|.|::...::.:..|                   :::.|.:.:..::.:|...
Mosquito   273 TLVGLALAMITLLGEVIYYRRKETSRNFIKVAPFGNADKPMARDGKRIALKQKSIAAVKHLLDLD 337

  Fly   859 GNTKAVKYPKNSSRSNASSK 878
            ...||::....:.:.|...:
Mosquito   338 TPAKALRGATTTVKINTKKE 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 35..395 CDD:380605
Periplasmic_Binding_Protein_Type_2 411..781 CDD:473866 64/227 (28%)
Ir8aXP_061519126.1 None
Blue background indicates that the domain is not in the aligned region.

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