DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Grik4

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_780690.2 Gene:Grik4 / 110637 MGIID:95817 Length:956 Species:Mus musculus


Alignment Length:883 Identity:315/883 - (35%)
Similarity:493/883 - (55%) Gaps:62/883 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WFVKMISTEASFPLGFILTSLLLAFPGC-RGERTNVGLVYENTDPDLEKIFHLAISKANEENEDL 65
            |.:.:..:..|..:..||...:    .| ||||.::               .||.::.|...|.|
Mouse    14 WLLMVACSPHSLRIAAILDDPM----ECSRGERLSI---------------TLAKNRINRAPERL 59

  Fly    66 QLHGVSVSIEP---GNSFETSKKLCKMLRQNLVAVFGPTSNLAARHAMS-ICDAKELPFLD---- 122
            ....|.|.|..   .:.:||::.:|::|.:.:|||.||:|:.|:...:| ||..||:|...    
Mouse    60 GKAKVEVDIFELLRDSEYETAETMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVPHFKVAPE 124

  Fly   123 --TRWDFGAQLPTINLHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTVRELLQMYGTAGPT 185
              .|:.. .:..|:||||....:.||:..::......:..:|....|.|..:.:||:.:..:..|
Mouse   125 EFVRFQL-QRFTTLNLHPSNTDISVAVAGILNFFNCTTACLICAKAECLLNLEKLLRQFLISKDT 188

  Fly   186 VTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPE-FFKQAQQVGLVTSDYRYIIGNLDW 249
            ::||.  ||...:...:|:.||: |..:.:::.:.|::.. ...:|.::|:|::.|.||..||::
Mouse   189 LSVRM--LDDTRDPTPLLKEIRD-DKTATIIIHANASMSHTILLKAAELGMVSAYYTYIFTNLEF 250

  Fly   250 HTMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYES-EEPFQNVSCPLTN---SMALVYDGVQ 310
            ....::.......||.|..:.:......||.:::|.:| :|...:|  |.|.   |.||::|.|.
Mouse   251 SLQRMDSLVDDRVNILGFSIFNQSHAFFQEFSQSLNQSWQENCDHV--PFTGPALSSALLFDAVY 313

  Fly   311 LLAETYKHVN------FRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKL 369
            .:....:.:|      .:|  |||.....|..|.:|:||::.:.|.||||.|.|:.:|.|:::.|
Mouse   314 AVVTAVQELNRSQEIGVKP--LSCGSAQIWQHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYAL 376

  Fly   370 EVIELAVSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYGMLKETSEKL 434
            ::::...:|.|:||||...:|...:....|.::..   ||.|.:.||.|.:..||.|||...:::
Mouse   377 KILQFTRNGFQQIGQWHVAEGLSMDSRLYASNISD---SLFNTTLVVTTILENPYLMLKGNHQEM 438

  Fly   435 EGNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLT 499
            ||||::|||.::::.||::.|.|:|..||..|..| |:....|.|.||:.|:|..:||:.:..||
Mouse   439 EGNDRYEGFCVDMLKELAEILRFNYKIRLVGDGVY-GVPEANGTWTGMVGELIARKADLAVAGLT 502

  Fly   500 MTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGR 564
            :|:|||..:||:.|||:|||.||:|..|...|..|||:.|||..|||::.|||:.||..:|::.|
Mouse   503 ITAEREKVIDFSKPFMTLGISILYRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVAR 567

  Fly   565 LSPAEWDNPYPCIEEPTE-LENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLIL 628
            |:|.||.:|:||.:.... |.||:|..|.|||.:|..:||||.:||:|.|||.|:..||.||||:
Mouse   568 LTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLII 632

  Fly   629 VSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFM-R 692
            :|||||||||||||:.:..||...|||: ::..:.||...||::..||:.|.|.|||||:.:| .
Mouse   633 ISSYTANLAAFLTVQRMEVPIESVDDLA-DQTAIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMYS 696

  Fly   693 DNPQYMTNTNQEGVDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRD 757
            ..|.....:.:||:.||.|||||||:|||..||..:|.|.|||:|.|||.|||||.|.....:||
Mouse   697 KQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRD 761

  Fly   758 TLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIF 822
            ....|:|::||...|..:|.|||:    ||.| ..:||..|..|.:.|:||:|:|:..|....||
Mouse   762 EFDLAILQLQENNRLEILKRKWWE----GGKC-PKEEDHRAKGLGMENIGGIFVVLICGLIVAIF 821

  Fly   823 VSLLEMVLGVKERSDENQVSFKTELLDEIRFILQCSGN 860
            :::||. |.....|:.::||...|::.|:|.|:.|..|
Mouse   822 MAMLEF-LWTLRHSEASEVSVCQEMVTELRNIILCQDN 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 98/374 (26%)
ANF_receptor 53..374 CDD:279440 92/341 (27%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 176/371 (47%)
Lig_chan 543..816 CDD:278489 130/274 (47%)
Grik4NP_780690.2 Periplasmic_Binding_Protein_type1 24..402 CDD:385651 107/404 (26%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 176/371 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846203
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.860

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