DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and grin2cb

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:990 Identity:226/990 - (22%)
Similarity:404/990 - (40%) Gaps:194/990 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SFPLGFILTSLLLAFPGCRGE------RTNVGLVYENTDPDLEKIFHLAISKANEENEDLQLHGV 70
            |..|.|....||...|.|||.      ..||.:|:..:....|  ....:|..|..:..|:::.:
Zfish    11 SLQLLFFFHLLLNVVPRCRGRPFFGPPSVNVAVVFSGSAHHSE--IKGRLSPENFLDMPLEVNPI 73

  Fly    71 SVSIEPGNSFETSKKLCK-MLRQNLVAVFGPTSNLAARHAMSICD-------AKELPFLDTRWDF 127
            :|.:...|......:||: |..::|             |.:...|       |:.|.|:.::   
Zfish    74 TVLVNDTNPRALLTRLCQTMAAESL-------------HGVVFEDDVDSEAVAQILDFVSSQ--- 122

  Fly   128 GAQLPTINLH-------PHPA------TLGVALRDMVVAL-------GWESFTII------YESG 166
             ..:|.:.:.       ||.|      .:|.::...:.|:       .|.:|.:|      ||: 
Zfish   123 -TSIPIVGISGGSAVVIPHKADGSTFLQMGASIDQQINAMFKVMEEYNWGNFVVITSLYPGYET- 185

  Fly   167 EYLPTVRELLQMYGTAGPTVTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQ 231
             ::..:|..............|..:|:.:..|.....|.::..|...::|..|.......|:.|.
Zfish   186 -FVDYIRSFTDTSYFLWELQDVLSFEMSVGANDIRTRRLLQQVDSQVYLVYCSHEEAQYLFRMAS 249

  Fly   232 QVGLVTSDYRYIIGNLDWHTMDLEPYQHAGTNITGLRLVSPDSEQVQEVA-------KALYESEE 289
            .|||:...|.:|:.:|.....:..|               |.|..|..::       |.|.:.  
Zfish   250 DVGLLGPGYIWIVPSLAVGNPEAAP---------------PASFPVGVISIITDRWRKTLRQR-- 297

  Fly   290 PFQNVSCPLTNSMALVYDGVQLLAETYKHVNFRPVALSCNDDSAWDKGY---TLVNYMKSLTLNG 351
                    :...:|::..||.   ..:||..|.|...|  |.|:..|.|   :|..:|  |.::.
Zfish   298 --------VREGVAIIVKGVH---SFHKHRGFIPEGHS--DCSSPVKSYANNSLFRHM--LNVSW 347

  Fly   352 LTGPIRFDYEGLRTDFKLEVIEL-AVSGMQKIGQWSGEDGFQENR----PAPAHSLEP--DMR-- 407
            ....:.|:.:|..|:..:.:|.| ..:...|:|.:.|  |..:.|    |.....|||  |.|  
Zfish   348 EHKDLSFNSDGYLTNPSMVIIALDRENHWDKVGSYEG--GILQMRYPVWPRYGSFLEPVSDNRHL 410

  Fly   408 ---SLVNKSFVVITAISEPYG-MLKET---------SEKLEGNDQ------FEGFGIELIDELSK 453
               :|..:.||::.::....| .::.|         :|.:.|:.:      .:||.|:::.:||:
Zfish   411 TVATLEERPFVIVESVDPATGTCVRNTVPCRRQSNRTESIIGHTEPYTKLCCKGFCIDILKKLSR 475

  Fly   454 KLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLG 518
            .:.|||...|..:.|:|.:  ..|.||||:.|:...||||.|..||:..||...|||::||:..|
Zfish   476 TIKFSYDLYLVTNGKHGKM--VRGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETG 538

  Fly   519 IGILF-RKPMKEPPKLFSFMSPFSGEVWLWLGLAYMG-VSISMFVLGRLSPAEWDNPYPCIEEPT 581
            |.::. |......|.  :|:.|:|..||:.:.:..:. |::::||....||..::......:.|.
Zfish   539 ISVMVARSNGTVSPS--AFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAKAPG 601

  Fly   582 ELENQFSFANCLWFSIGALLQQGSELA-PKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESL 645
              ...|:....:|...|.:......:. ||..:::.:...|.||.:|.::|||||||||:..|..
Zfish   602 --GPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQY 664

  Fly   646 VTPINDADDLSKNKGGVNY-----GAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNTNQEG 705
            :..::...|....|...:|     |....|:|....: ||||          |...:|...||:|
Zfish   665 IDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIR-SNYP----------DMHTHMIKYNQKG 718

  Fly   706 VDRVENSNY-----AFLMESTTIEYIT--ERRCTLTQVGA--LLDEKGYGIAMRKNWPYRDTLSQ 761
            |:...||..     ||:.::..:.|:.  :..|.|..:|:  :....|||||::|:..::..:..
Zfish   719 VEEALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDL 783

  Fly   762 AVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLL 826
            |:|:....|...:::|.|.     .|.|.:...:..:..|:|.|:.|||.::.|.....:.|...
Zfish   784 ALLQFLGDGDTQRLETVWL-----SGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAW 843

  Fly   827 EMVLGVKERSDENQVSFKTELLDEI----RFILQC------SGNTKAVKYP---KNSSRSN---- 874
            |.:|..|.|...:    |::.||.:    |.|..|      .|.:..::.|   .|.:::|    
Zfish   844 EHLLYWKLRHSVH----KSDRLDFLLAISRGIYSCFNGVEDIGRSTGIQNPDITANYAQANMLKM 904

  Fly   875 -ASSKSKGSSMSVDS 888
             .::|...||..|::
Zfish   905 LQTAKDIVSSAKVEN 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 72/398 (18%)
ANF_receptor 53..374 CDD:279440 66/364 (18%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 106/402 (26%)
Lig_chan 543..816 CDD:278489 70/288 (24%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 76/413 (18%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 110/422 (26%)
NMDAR2_C 845..>932 CDD:313729 17/79 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591317
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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