DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and gria1

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_004912781.1 Gene:gria1 / 100127569 XenbaseID:XB-GENE-995621 Length:903 Species:Xenopus tropicalis


Alignment Length:944 Identity:299/944 - (31%)
Similarity:481/944 - (50%) Gaps:101/944 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 MISTEASFPLGFILTSLLLAFPGCRGERTNVGLVYENTDPDLEKIFHLAISKANEENEDL-QLHG 69
            |:...|.|...|:...|.:.||    ....:|.::.|........|..|:|:.:|..:.| |:..
 Frog     1 MLRIFAYFCTSFLGAVLGVNFP----NHIQIGGLFPNQQSQEHAAFRFALSQLSEPPKLLPQIDI 61

  Fly    70 VSVSIEPGNSFETSKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLDTRWDFGAQLPTI 134
            |::|    :|||.:...|....:.:.|:||...........|.|.|..:.|:.      ...|..
 Frog    62 VNIS----DSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFIT------PSFPVA 116

  Fly   135 NLHPHPATLGVALRDMVVAL----GWESFTIIYESGEYLPTVRELLQMYGTAGPTVTVRRYELDL 195
            ..:.....|...|:|.::::    .|:.|..||::...|..::::|.........||........
 Frog   117 TSNQFVLQLRPELQDALISVIEYYKWKKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTT 181

  Fly   196 NGNYRNVLRRIRNADDFSFVV------VGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDWHTMDL 254
            ...||.:.:.:..:.|...|:      :.::.|......:...:|     |.||:.||.:..:|:
 Frog   182 EEGYRLLFQDLDKSKDRQIVIDCESERLNAILTQVVVKLEKNIIG-----YHYILANLGFMDIDM 241

  Fly   255 EPYQHAGTNITGLRLVSPDSEQVQEVAKAL--YES-EEPFQNVSCPLTNSMALVYDGVQLLAETY 316
            :.::.||.|:||.:||:.....|..:.:..  |:. |:|..:...|...| ||.||||:::||.:
 Frog   242 QKFKEAGANVTGFQLVNYTDTMVSRIMQQWKNYDGREQPRVDWKKPKYTS-ALTYDGVRVMAEAF 305

  Fly   317 KHVNFRPVALS---------CNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVI 372
            :.:..:.:.:|         .|....|.:|..:...::.:.|.||:|.::|:.:|.||::.|.|:
 Frog   306 QSLRKQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRLEGLSGNVQFNEKGRRTNYTLHVL 370

  Fly   373 ELAVSGMQKIGQWSGEDGFQENRPAPAHSLEP---------DMRSLVNKSFVVITAISEPYGMLK 428
            ||...|::.|..|:.:|           .|.|         |...:.|::::|.|.:..||.|||
 Frog   371 ELKHEGIRHIAHWNEDD-----------KLIPLATDAQAGNDTIGVQNRTYIVTTILEAPYVMLK 424

  Fly   429 ETSEKLEGNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADM 493
            :.:::|||||:|||:.:||..|::|.:||.|...:.:|.|||..|.....||||:.|::..|||:
 Frog   425 KNADQLEGNDRFEGYCVELAAEIAKHVGFKYKLEIVKDGKYGARDSDMKAWNGMVGELVYGRADL 489

  Fly   494 GITDLTMTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSIS 558
            .:..||:|..||..:||:.|||||||.|:.:||.|..|.:|||:.|.:.|:|:.:..||:|||:.
 Frog   490 AVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVV 554

  Fly   559 MFVLGRLSPAEWDNPYPCIEE-----PTELENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVA 618
            :|::.|.||.||.|..  .||     .|:..|:|...|.||||:||.:|||.:::|::.|.|.|.
 Frog   555 LFLVSRFSPYEWHNEE--FEEGKEQPTTDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVG 617

  Fly   619 ASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPT 683
            ..|||||||::||||||||||||||.:|:||..||||:| :..:.||....|:|..|||.|....
 Frog   618 GVWWFFTLIIISSYTANLAAFLTVERMVSPIESADDLAK-QTEIAYGTLDSGSTKEFFKRSKIAV 681

  Fly   684 YQRMYEFMRD-NPQYMTNTNQEGVDRVENS--NYAFLMESTTIEYITERR-CTLTQVGALLDEKG 744
            :::|:.:||. .|.....|.:||::||..|  .||:|:|||..|||.:|: |...:||..||.||
 Frog   682 FEKMWTYMRSAEPSVFVKTTEEGMNRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKG 746

  Fly   745 YGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGA----VALEISN 805
            ||||..|..|.|..::.|||::.|||:|.|:|:|||.:|   |.|  ..:|||:    .||.:||
 Frog   747 YGIATPKGSPLRGAVNLAVLKLSEQGVLDKLKSKWWYDK---GEC--GSKDSGSKDKTSALSLSN 806

  Fly   806 LGGVFLVMGVGSFFGIFVSLLEMVLGVKERSDENQVSF-----KTELLDEIRFILQC-------- 857
            :.|||.::..|....:.|:|:|..  .|.||:..::..     :|.:.:.:|.....        
 Frog   807 VAGVFYILIGGLGLAMLVALIEFC--YKSRSESKKMKGFCLIPQTTVTETVRMATLPRPSTAGGS 869

  Fly   858 --SGNTKAVKYPKNSSRSNASSKSKGSSMSVDSL 889
              :|...:..:||........|...|.::....|
 Frog   870 GENGRVVSHDFPKTMQTIPCMSHGAGMALGATGL 903

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 86/376 (23%)
ANF_receptor 53..374 CDD:279440 77/343 (22%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 174/378 (46%)
Lig_chan 543..816 CDD:278489 129/285 (45%)
gria1XP_004912781.1 PBP1_iGluR_AMPA_GluR1 26..393 CDD:380613 88/393 (22%)
PBP2_iGluR_AMPA_GluR1 407..788 CDD:270447 177/386 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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