DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and GLR3.6

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:919 Identity:226/919 - (24%)
Similarity:365/919 - (39%) Gaps:182/919 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLLQLILNCRKAQSL-------PDIIKIGGLF---HPADDHQELAFRQAVDRINADRSILPRSKL 66
            ||:.:|.|....|.|       |.::.||.:|   .......::|...||:.:||..|||..:.|
plant     5 LLMLIICNAVPLQGLTKIVSARPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDVNASPSILNTTTL 69

  Fly    67 VAQIERI----SPFDSFHAGKRVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHLE------ 121
                 ||    :.::.|.:.......:.....||.|||.|.||..|..:...::||.|.      
plant    70 -----RIIMHDTKYNGFMSIMEPLQFMESETVAIIGPQRSTTARVVAHVATELKIPILSFSATDP 129

  Fly   122 ----NRWDYRLRRESCLVNLYPHPNTLSK--AYVDIVRHWGWKTFTIIYENND----GIVRLQEL 176
                .::.:.:|...         |.|.:  |..|||:.:||:....||.::|    |:..|.:.
plant   130 TMSPLQFPFFIRTSQ---------NDLFQMAAIADIVQFYGWREVVAIYGDDDYGRNGVAALGDR 185

  Fly   177 L---------KAHGMTPFPITVRQLSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQI 232
            |         || .:.|.| |...::|      ||.::..|....||:..|.....|:...|:.:
plant   186 LSEKRCRISYKA-ALPPAP-TRENITD------LLIKVALSESRIIVVHASFIWGLELFNVARNL 242

  Fly   233 GMMSDYHSYLVTS-----------LDLHTVNLDEFRYGGTNITGFRLI-----NEKIVSDVVRQW 281
            ||||..:.::.|:           |.|.|:|         ||.|...:     |..:..:.|::|
plant   243 GMMSTGYVWIATNWLSTIIDTDSPLPLDTIN---------NIQGVITLRLHTPNSIMKQNFVQRW 298

  Fly   282 SIDEKGLLRSANLTTVRSETALM--YDAVHLFAKALHDL---DTSQQIDIHPI---------SCD 332
            .          |||.|...|..:  ||.|.|.|:|:.|.   ..:.....:||         ..|
plant   299 H----------NLTHVGLSTYALYAYDTVWLLAQAIDDFFKKGGNVSFSKNPIISELGGGNLHLD 353

  Fly   333 GQSTWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPAGIRKIGTW-----NSTL 392
            ....:..|...:..:..|:..|||..:||.......:...|::.:...|...||.|     .|.:
plant   354 ALKVFDGGKIFLESILQVDRIGLTGRMKFTSDRNLVNPAFDVLNVIGTGYTTIGYWFNHSGLSVM 418

  Fly   393 P-DGINFTRTFSQKQQEIEANLKNKTLVVTTILSN---------PYCMRKESAIPLSGNDQFEGY 447
            | |.:..|....||...:.....:..:....:.||         |...|.|..:.:..|....|:
plant   419 PADEMENTSFSGQKLHSVVWPGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEEVVSVKSNGMITGF 483

  Fly   448 AVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAV 512
            .||:.......|.:....:||..|: |..|....|   ::|.:.....|..:.|:||..||.:..
plant   484 CVDVFIAAINLLPYAVPFELVAFGN-GHDNPSNSE---LVRLITTGVYDAGVGDITIITERTKMA 544

  Fly   513 DFTTPFMNLGVSILYRKPI-KQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWPA 576
            |||.|::..|:.::  .|: |...:..:||.|.:..:|:..|.::|.|..:::.|          
plant   545 DFTQPYVESGLVVV--APVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCL---------- 597

  Fly   577 YTDAHGEKVES--QFTLLNCMWFAIGSLMQQGCDFLPKALST----RMVAGIWWFFTLIMISSYT 635
             ...|.::...  :..::...||:..:|.     |..:..:|    |:|..||.|..||:.||||
plant   598 -EHKHNDEFRGPPRRQVITTFWFSFSTLF-----FSHRETTTSNLGRIVLIIWLFVVLIINSSYT 656

  Fly   636 ANLAAFLTVERMDSPIESAEDLAKQTR---IKYGALKGGSTAAFFRDSKISTYQRMWSFMESAR- 696
            |:|.:.|||.::.|||:..|.|  ||.   |.|      ...:|.||..|.......|.:...| 
plant   657 ASLTSILTVHQLSSPIKGIETL--QTNHDPIGY------PQGSFVRDYLIHELNIHVSRLVPLRS 713

  Fly   697 PSVFTASNGEGVERVAKGKGSYAFLM-ESTSIEYVTERNCELTQVGGMLDTKSYGIATPPNSPYR 760
            |..:..:..:|     .|||..|.:: |...||......||...||.......:|.|.|.|||..
plant   714 PEEYDKALRDG-----PGKGGVAAVVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLA 773

  Fly   761 TAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGV 825
            ..:::.||:|.|.|.:..::.||...|    .|.::.::..  .:.|.|.:..|:|||    .||
plant   774 VDVSAAILQLSENGDMQRIRDKWLLRK----ACSLQGAEIE--VDRLELKSFWGLFVV----CGV 828

  Fly   826 ACVIAVCEF 834
            |||:|:..:
plant   829 ACVLALAVY 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 101/433 (23%)
ANF_receptor 42..378 CDD:279440 91/394 (23%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 101/390 (26%)
Lig_chan 547..823 CDD:278489 76/286 (27%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40717
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.780

Return to query results.
Submit another query.