DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and GLR2.8

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001324459.1 Gene:GLR2.8 / 817459 AraportID:AT2G29110 Length:948 Species:Arabidopsis thaliana


Alignment Length:862 Identity:187/862 - (21%)
Similarity:338/862 - (39%) Gaps:180/862 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 RSKLVAQIERISPFDSFHAGKRVCGLL-NIGVAAIFGPQSSHTASHVQSICDNMEIPHL------ 120
            |::|...: |.|..|:..|......|: |..|:||.||..|..|..:..:.:..::|.:      
plant    69 RTRLALHV-RDSMKDTVQASAAALDLIQNEQVSAIIGPIDSMQAKFMIKLANKTQVPTISFSATS 132

  Fly   121 ----ENRWDYRLRRESCLVNLYPHPNTLS-----KAYVDIVRHWGWKTFTIIYENN---DGIV-- 171
                ..:.||.:|            .|:.     ||...|...:||::...||.:|   :||:  
plant   133 PLLTSIKSDYFVR------------GTIDDSYQVKAIAAIFESFGWRSVVAIYVDNELGEGIMPY 185

  Fly   172 ---RLQELLKAHGMTPFPITVRQLSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQIG 233
               .||::.....:.|     .:.:|....:.|.|.:.......:| ..::.....:.::|.:||
plant   186 LFDALQDVQVDRSVIP-----SEANDDQILKELYKLMTRQTRVFVV-HMASRLASRIFEKATEIG 244

  Fly   234 MMSDYHSYLVTSLDLHTVNLDEFRYGGT-----NITGFRLINEKIVSDVVRQWSIDEKGLLRSAN 293
            ||.:.:.:|:|:...|.:.  ...:|.:     .:.|.|       |.|.:...:::..|....|
plant   245 MMEEGYVWLMTNGMTHMMR--HIHHGRSLNTIDGVLGVR-------SHVPKSKGLEDFRLRWKRN 300

  Fly   294 LTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPI--------SCDGQS----------TWQHG 340
            .   :.|...:.|.:.:|....:|..|:..:.:...        :..|.|          ..::|
plant   301 F---KKENPWLRDDLSIFGLWAYDSTTALAMAVEKTNISSFPYNNASGSSNNMTDLGTLHVSRYG 362

  Fly   341 FSLINYMKIVEMKGLT---NVIKFDHQGFRTDFMLDIVELTPAGIRKIGTW---NSTLPDGINFT 399
            .||:..:..:...||.   |:|  |.|.....|  :|:.......|.:|.|   |..:....|.|
plant   363 PSLLEALSEIRFNGLAGRFNLI--DRQLESPKF--EIINFVGNEERIVGFWTPSNGLVNVNSNKT 423

  Fly   400 RTFS----------------QKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYA 448
            .:|:                .|..||..|.| |..|...:....:...:....|::.....:|||
plant   424 TSFTGERFGPLIWPGKSTIVPKGWEIPTNGK-KIKVGVPVKKGFFNFVEVITDPITNITTPKGYA 487

  Fly   449 VDLIHEISKSLGFN-----YKIQLVPDGSYGSL-NKLTGEWNGMIRELLEQRADLAIADLTITFE 507
            :|:.....|.|.::     |:.: .||..|..| .|:.   ||.:        |..:.|:|||..
plant   488 IDIFEAALKKLPYSVIPQYYRFE-SPDDDYDDLVYKVD---NGTL--------DAVVGDVTITAY 540

  Fly   508 REQAVDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPY 572
            |....|||.|:...|||::......:..|.:.||.|..||:|:..|..::.:..::::      :
plant   541 RSLYADFTLPYTESGVSMMVPVRDNENKNTWVFLKPWGLDLWVTTACFFVLIGFVVWL------F 599

  Fly   573 EWPAYTDAHG---EKVESQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSY 634
            |....||..|   .::.:.|      ||:..:::....:.:...|: |.|..:|.|..|::..||
plant   600 EHRVNTDFRGPPHHQIGTSF------WFSFSTMVFAHREKVVSNLA-RFVVVVWCFVVLVLTQSY 657

  Fly   635 TANLAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRD---------SKISTYQRMWS 690
            ||||.:||||:|......:.:||     ||.|...|....||.:|         ||:..:     
plant   658 TANLTSFLTVQRFQPAAINVKDL-----IKNGDYVGYQHGAFVKDFLIKEGFNVSKLKPF----- 712

  Fly   691 FMESARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNC-ELTQVGGMLDTKSYGIATP 754
                       .|:.|....::.|..|.|| .|...:..:..:.| :...|.....|..:|.|.|
plant   713 -----------GSSEECHALLSNGSISAAF-DEVAYLRAILSQYCSKYAIVEPTFKTAGFGFAFP 765

  Fly   755 PNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVL 819
            .|||....::..||.:.:..::..::.||:.::   ..|  ...|::.::|.|.|.:..|:|:: 
plant   766 RNSPLTGDVSKAILNVTQGDEMQHIENKWFMKQ---NDC--PDPKTALSSNRLSLRSFWGLFLI- 824

  Fly   820 MGGMGVACVIAVCEFVW 836
               .|:|..:|:..||:
plant   825 ---AGIASFLALLIFVF 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 74/386 (19%)
ANF_receptor 42..378 CDD:279440 70/364 (19%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 93/388 (24%)
Lig_chan 547..823 CDD:278489 65/288 (23%)
GLR2.8NP_001324459.1 PBP1_GABAb_receptor_plant 35..419 CDD:380645 74/384 (19%)
GluR_Plant 454..795 CDD:270404 93/388 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.880

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