DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and GLR2

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001318239.1 Gene:GLR2 / 816231 AraportID:AT2G17260 Length:925 Species:Arabidopsis thaliana


Alignment Length:939 Identity:206/939 - (21%)
Similarity:368/939 - (39%) Gaps:194/939 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LILNCRKAQSLPDIIKIGGLFHPADDHQE---LAFRQAVDRINADRSILPRSKLVAQIERISPFD 77
            |:|:...:.|.|.:||:|.:|.....:.|   :||:.|.:.:|:|.|.|..|||     ||...|
plant    20 LLLSEGASSSRPPVIKVGAIFGLNTMYGETANIAFKAAEEDVNSDPSFLGGSKL-----RILMND 79

  Fly    78 SFHAG-KRVCGLLNI---GVAAIFGPQSS---HTASHVQSICDNMEIPHLE-NRWDYRLR--RES 132
            :..:| ..:.|.|..   .|.||.|||:|   |..||   :.:.:.:|.|. ...|..|.  :..
plant    80 AKRSGFLSIMGALQFMETDVVAIIGPQTSIMAHVLSH---LANELTVPMLSFTALDPTLSPLQFP 141

  Fly   133 CLVNLYPHPNTLSKAYVDIVRHWGWKTFTIIYENND----GIVRL-------------------- 173
            ..|...|....|.:|..:::.::||.....:|.::|    |:..|                    
plant   142 FFVQTAPSDLFLMRAIAEMITYYGWSDVVALYNDDDNSRNGVTALGDELEERRCKISYKAVLPLD 206

  Fly   174 ----------QELLKAHGMTPFPITVRQLSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQ 228
                      :||:|..||....|.|....::|..                          :.|:
plant   207 VVITSPVEIIEELIKIRGMESRVIVVNTFPNTGKM--------------------------IFKE 245

  Fly   229 AQQIGMMSDYHSYLVTS-----LDLHTVNLDEFRYGGTNITGFRLINEKIVSDVVRQWSIDEKGL 288
            |:::|||...:.::.|:     || ..:.||.....|.........:.:...|...:|    |..
plant   246 AERLGMMEKGYVWIATTWLSSVLD-SNLPLDTKLVNGVLTLRLHTPDSRKKRDFAARW----KNK 305

  Fly   289 LRSANLTTVRSETALMYDAVHLFAKALHDL-----DTSQQIDIHPISCDGQ-------STWQHGF 341
            |.:.....:.......||.|.:.|:|:..|     :.|...|....|..|:       |.:..|.
plant   306 LSNNKTIGLNVYGLYAYDTVWIIARAVKTLLEAGGNLSFSNDAKLGSLKGEALNLSALSRFDQGS 370

  Fly   342 SLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPAGIRKIGTWNSTLPDGINFTRTFSQKQ 406
            .|::|:...:|.|||..::|...........||:.|....:.:||.|::.....|....:|..|.
plant   371 QLLDYIVHTKMSGLTGPVQFHPDRSMLQPSYDIINLVDDRVHQIGYWSNYSGLSIVPPESFYSKP 435

  Fly   407 QEIEANLKNKTLVV----TTILSNPYCMR----------------KESAIPLSG-NDQFEGYAVD 450
            ....::.::...|.    |::....:..|                |:....::| :::.:||.:|
plant   436 PNRSSSNQHLNSVTWPGGTSVTPRGWIFRNNGRRLRIGVPDRASFKDFVSRVNGSSNKVQGYCID 500

  Fly   451 LIHEISKSLGFNYKIQLV--PDG----SYGSL-NKLTGEWNGMIRELLEQRADLAIADLTITFER 508
            :.....|.|.:....:.:  .||    :|..| ||:|   .|:       ..|..:.|:.|..:|
plant   501 VFEAAVKLLSYPVPHEFIFFGDGLTNPNYNELVNKVT---TGV-------DFDAVVGDIAIVTKR 555

  Fly   509 EQAVDFTTPFMNLGVSILYRKPI-KQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPY 572
            .:.||||.|::..|:.::  .|: :...|.::||.|.:|.:|...|:.::.|...::||.     
plant   556 TRIVDFTQPYIESGLVVV--APVTRLNENPWAFLRPFTLPMWAVTASFFVIVGAAIWILE----- 613

  Fly   573 EWPAYTDAHGEKVESQF------TLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMI 631
                      .::..:|      .::..:||...::.....:.....|. |||..||.|..||:.
plant   614 ----------HRINDEFRGPPRRQIITILWFTFSTMFFSHRETTVSTLG-RMVLLIWLFVVLIIT 667

  Fly   632 SSYTANLAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESAR 696
            |||||:|.:.|||::::|||:..:.|...|. :.|...|.....:..|.......|:   :..|.
plant   668 SSYTASLTSILTVQQLNSPIKGVDTLISSTG-RIGFQVGSFAENYMTDELNIASSRL---VPLAS 728

  Fly   697 PSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTKSYGIATPPNSPYRT 761
            |..:..:...|.......:..|..|..|...::.. |..|.|:.|       :|.|.|.:||...
plant   729 PEEYANALQNGTVAAIVDERPYIDLFLSDYCKFAI-RGQEFTRCG-------WGFAFPRDSPLAV 785

  Fly   762 AINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVA 826
            .:::.||.|.|.|:|..:..:|..:    ..|.......|..:.:|.:.:..|:|:|    :|:|
plant   786 DMSTAILGLSETGELQKIHDRWLSK----SNCSSPHGSQSGDSEQLNVHSFWGMFLV----VGIA 842

  Fly   827 CVIA--------VCEFVWKSRKVAVEERL 847
            |::|        :.:|...:.:|.|||.:
plant   843 CLVALFIHFFKIIRDFCKDTPEVVVEEAI 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 92/429 (21%)
ANF_receptor 42..378 CDD:279440 85/399 (21%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 91/404 (23%)
Lig_chan 547..823 CDD:278489 63/281 (22%)
GLR2NP_001318239.1 PBP1_GABAb_receptor 35..424 CDD:107361 92/427 (22%)
GluR_Plant 468..808 CDD:270404 87/379 (23%)
Lig_chan 594..843 CDD:306551 64/284 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40717
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.780

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