DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and grid1a

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:903 Identity:252/903 - (27%)
Similarity:438/903 - (48%) Gaps:120/903 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LPLLLLQL---ILNCRKAQSLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQI 70
            :.||::.|   ||.||.|:: ..||.||.:|.......:..|:.|:..::.:..||...::...|
Zfish     1 MELLVISLSLWILQCRSARA-DSIIHIGAIFEQNAIRDDEVFQLAISDLSLNDDILQSERITHSI 64

  Fly    71 ERISPFDSFHAGKRVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHL--ENRWDYRLRRESC 133
            :.|.|.:.|.|.:..|.|:|.|:.|:........|:.:||:.|.|.||||  :...|...|.| |
Zfish    65 KLIEPNNPFQAVQEACELMNQGILALVSSTGCAAANALQSLTDAMHIPHLFIQRNGDGTPRAE-C 128

  Fly   134 LVNLYPH----------PNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPIT 188
            .:|..|.          |..|:...:.:|....|..|.:.|::...:..|:..|.........::
Zfish   129 QLNPSPDGERYTLAARPPVRLNDVMITLVSELRWHKFIVFYDSEYDVRGLRGFLDQASRMGLDVS 193

  Fly   189 VRQ-----------------LSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQIGMMS 236
            ::|                 :.:...||..|::      |.::|...|.::  .:.||.:..:.|
Zfish   194 LQQVDRNVTKVFSTLFSTMRMEELNRYRDTLRR------AILLLSPRTAQV--FIHQAVETNLAS 250

  Fly   237 DYHSYLVTSLDLHTVNLDEFRYGG----------------TNITGFRLINEKIVSDVVRQWSIDE 285
            ....::..:.::....:.|..:..                |||...|  |...:|.::..   .:
Zfish   251 KDSHWVYANEEVSDTEIMELVHSALGRMTVIRQIFPLWRDTNIRCMR--NNHRISSLLCD---PQ 310

  Fly   286 KGLLRSANLTTVRSETALMYDAVHLFAKALH-DLDTSQQIDIHPISCDGQST--WQHGFSLINYM 347
            :|.|:|..::::     .:||:|.:.|.|.: .|:..:...:..::|..:||  |..|:|:::.:
Zfish   311 EGYLQSLEVSSL-----YLYDSVLMLANAFYRKLEDRKWHSMASLNCMRKSTKPWNGGWSMLDTI 370

  Fly   348 KIVEMKGLTNVIKFDHQGFRTDFMLDIV-----ELTPAGIRKIGTWNSTLPDGINFTRTFSQKQQ 407
            :...:.|||.::.|...|..:....:|:     |.....::::.||:|  ..|:|    .|.::.
Zfish   371 QKGRISGLTGLMDFRSNGANSHVQFEILGTSYSETFGKDVKRLATWDS--DRGLN----GSLREN 429

  Fly   408 EIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSLGFNYKIQLVPDGS 472
            ..:..::..||.|.|:|..|:.|..|:.  |....:::|:::|::..::|.|||.|::..|.|..
Zfish   430 RADHGMQGITLKVVTLLEEPFVMVAENI--LGQPKRYKGFSIDVLDALAKILGFKYEMYQVADAK 492

  Fly   473 YGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSILYRKPIKQPPNL 537
            ||| .:..|.|||||.||:.:|||:||:.:|||.|||..|||:..:::..|.||..| .::..|:
Zfish   493 YGS-PQTNGSWNGMIGELIGKRADVAISAITITPERENVVDFSKRYLDYSVGILMTK-TEERLNI 555

  Fly   538 FSFLSPLSLDVWIYMATAYLGVSVLLFILAKFT---------PYEWPAYTDAHGEKVESQFTLLN 593
            ||.|:|..|.||..:|.|...|.|::|:|.:..         |:: ||       .|.:.|.  :
Zfish   556 FSLLAPFDLAVWACIAAAIPVVGVMVFLLRRVQSVRSQNPPGPHQ-PA-------SVTTSFQ--S 610

  Fly   594 CMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAAFLTVERMDSPIESAEDLA 658
            .:|...|:.:|||.:....:::.|:..|.||.||||:.|||||||||:|||.|||:.|.:.:||:
Zfish   611 AIWIVYGAFVQQGGESFMSSMALRIAMGSWWLFTLIVCSSYTANLAAYLTVSRMDNAIRTFQDLS 675

  Fly   659 KQTRIKYGALKGGSTAAFFRD------SKISTYQRMW-SFMESARPSVFTASNGEGVERVAKGKG 716
            ||:.|.||.::..:...:||.      .:.||:..:| :..::........|..||:.:|.  :.
Zfish   676 KQSEINYGTVRESAVFEYFRVKGTNPLEQDSTFAELWRTINKNQGQDNSVTSPAEGIRKVK--RD 738

  Fly   717 SYAFLMESTSIEY--VTERNCELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQEEGKLHIL 779
            .||||.:...:||  :|:.:|.|...|..:.:|.||:|....||||...:..||.|||:|.|.||
Zfish   739 PYAFLWDMAVLEYAALTDDDCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQEKGDLDIL 803

  Fly   780 KTKWWKEKRGGGKCRVET-SKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFVW 836
            |.|||..|   |:|.::. ::..:....|.|.:..|||.:|..|:.:||::|..|..|
Zfish   804 KQKWWPRK---GRCDLDKHAEPQTEGRALRLHSFAGVFCILAAGLLLACLVAALESWW 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 83/418 (20%)
ANF_receptor 42..378 CDD:279440 76/388 (20%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 141/387 (36%)
Lig_chan 547..823 CDD:278489 98/294 (33%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 84/423 (20%)
PBP2_iGluR_delta_1 437..809 CDD:270448 141/387 (36%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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