DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and grin2ab

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_009304490.1 Gene:grin2ab / 570493 ZFINID:ZDB-GENE-070424-223 Length:1445 Species:Danio rerio


Alignment Length:932 Identity:211/932 - (22%)
Similarity:370/932 - (39%) Gaps:202/932 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VLPLLLLQLILNCRKAQSLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSI---LPRSKLVAQ 69
            |:.|::|..:|...:|...|..:.|..:........|.|.|.|       |.|   |..:.|..|
Zfish     5 VVRLMVLWALLGGSQAAEKPPSLSIAVILGQTPTVSESALRPA-------RGIGAPLDVTVLSIQ 62

  Fly    70 IERISP------FDSFHAGKRVCGLL------NIGVAAIFGPQSSHTASHVQSICDNMEIPHLEN 122
            :.:..|      .....:.:|:.||:      ...||.:....||.|:..:..|.....:...|.
Zfish    63 VNQTDPGSMLTHLCELMSRQRLHGLVYGDGTDQEAVAQMLDFVSSQTSMPILGIHGGSAMTMAEK 127

  Fly   123 -------RWDYRLRRESCLVNLYPHPNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAH 180
                   ::...|::|:.|:             :.|:..:.|..|:::            ..|..
Zfish   128 DSSSSFFQFGASLQQEALLM-------------LAIMEEYDWHVFSVV------------TTKFP 167

  Fly   181 GMTPFPITVRQLSDSGDYRPLLK-----------------QIKNSAEAHIVLDCSTERIHEVLKQ 228
            |...|..|||...|....|..|:                 |:|......|:|.||.:....|:::
Zfish   168 GFQEFIATVRVTVDHSFVRWDLQSVVTLDGVGEPEDRAHVQLKRIQSPVILLYCSKDEAALVMEE 232

  Fly   229 AQQIGMMSDYHSYLVTSLDLHTVNLDE----FRYGGTNITGFRLINEKIVSDVVRQWSI------ 283
            |:.:|:......::|.||.  |.||:.    |..|             ::|....:|..      
Zfish   233 ARSLGLTGAGFVWIVPSLT--TGNLEHIPEAFPAG-------------MISVTYDEWDYPLETRL 282

  Fly   284 -DEKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPISCDGQSTWQH--GFSLIN 345
             |..|::.||.....|.|                     .:|.....||.|||....  ..:|..
Zfish   283 QDAVGIISSAAAAMFREE---------------------GRIPDGTASCYGQSEKPEVPPSALRR 326

  Fly   346 YMKIVEMKGLTNVIKFDHQGFRTDFMLDIVEL-TPAGIRKIGTW-NSTLPDGINF---TRTFSQK 405
            ||..|.:.|..:  .|...|::.:..|.::.| |.....|:|.| |.:|  .:.|   .|..|..
Zfish   327 YMMGVNLGGKDH--SFMDDGYQVNPKLVVIVLNTEREWEKMGRWENHSL--RLKFPVWPRYNSFG 387

  Fly   406 QQEIEANLKNKTLVVTTILSNPY------------CMRKESAIP----LSGNDQ--------FEG 446
            ..:.:.|    .|.:.|:...|:            |||  :::|    :..|..        .:|
Zfish   388 DMDADEN----HLSIVTLEERPFVIVDDVDILTGTCMR--NSVPCRKHIKDNTTEGSYVKKCCKG 446

  Fly   447 YAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQA 511
            :.:|::.:|::::.|.|.:.||.:|.:|  .|:...||||:.|::.::|.:|:..|||..||.:|
Zfish   447 FCIDILKKIARNVKFTYDLYLVTNGKHG--KKINNVWNGMVGEVVYKKAVMAVGSLTINEERSEA 509

  Fly   512 VDFTTPFMNLGVSILY-RKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKF-TPYEW 574
            :||:.||:..|:|::. |......|:  :||.|.|..||:.|....|.|:.:...|.:| :|..:
Zfish   510 IDFSVPFVETGISVMVSRSNGTVSPS--AFLEPFSASVWVMMFVMLLIVTAIAVFLFEFISPLGF 572

  Fly   575 ----PAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDFL-PKALSTRMVAGIWWFFTLIMISSY 634
                ....|.||    ..||:...:|...|.:........ |:..:::.:..:|.||.:|.::||
Zfish   573 NRNLAQGKDPHG----PSFTIGKAVWLLWGLVFNNSVPVQNPRGTTSKFIVSVWAFFAVIFLASY 633

  Fly   635 TANLAAFLTVERMDSPIESAEDLAKQTRIKY------GALKGGSTAAFFRDSKISTYQRMWSFME 693
            |||||||:..|.....:....|...|:...|      |.:..|||....|.:..:.:|.|..:.:
Zfish   634 TANLAAFMIQEEFVDQVTGLSDRKFQSPYSYSPPFRFGTVPNGSTERNIRKNYPAMHQYMVKYHQ 698

  Fly   694 SARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERN--CELTQVGG--MLDTKSYGIATP 754
            :.......:        :..||.. ||:.::..:.|:..|:  |:|..:|.  :..|..||||..
Zfish   699 TGVVDALVS--------LKTGKLD-AFIYDAAVLNYMAGRDDGCKLVTIGSGYIFATTGYGIAMQ 754

  Fly   755 PNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVL 819
            ..|.::..::..||.:..:|::..|:.:|..     |.|..|  |:...:::|.:.|:.|||.:|
Zfish   755 KGSYWKRLVDLAILGIIGDGEMEELEAQWLT-----GICHNE--KNEVMSSQLDVDNMAGVFYML 812

  Fly   820 MGGMGVACVIAVCE--FVWKSR 839
            ...|.::.:..|.|  |.|:.|
Zfish   813 AAAMALSLITFVWEHLFYWRLR 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 82/419 (20%)
ANF_receptor 42..378 CDD:279440 75/388 (19%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 103/410 (25%)
Lig_chan 547..823 CDD:278489 70/291 (24%)
grin2abXP_009304490.1 PBP1_iGluR_NMDA_NR2 25..382 CDD:107373 83/428 (19%)
ANF_receptor 48..358 CDD:279440 71/372 (19%)
PBP2_iGluR_NMDA_Nr2 393..790 CDD:270436 106/424 (25%)
Lig_chan 544..816 CDD:278489 70/291 (24%)
NMDAR2_C 827..1445 CDD:287527 3/8 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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