DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and GluRIB

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster


Alignment Length:987 Identity:323/987 - (32%)
Similarity:502/987 - (50%) Gaps:212/987 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILPRS-KLVAQIERISPFDSFHAGKRVCGL 88
            ||.:.|.:|.:|....|..:.||:.|:  :|.:.::..|. :|.|.::.|:..|:|...:.:|..
  Fly    37 SLTEKIPLGAIFEQGTDEVQSAFKYAM--LNHNLNVSSRRFELQAYVDVINTADAFKLSRLICNQ 99

  Fly    89 LNIGVAAIFGPQSSHTASHVQSICDNMEIPH--------------------LENRWDYRLRRESC 133
            .:.||.::.|..|..:...:.|..:..::|.                    |..|.||.      
  Fly   100 FSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLTPSSGFLDFALSMRPDYH------ 158

  Fly   134 LVNLYPHPNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTP----FPI-TVRQLS 193
                        :|.:|.::.:||:....:|:::||::|||::.:  |:.|    |.: .|:::|
  Fly   159 ------------QAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIYQ--GLRPGNESFQVELVKRIS 209

  Fly   194 DSG---DYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQ---AQQIGMMSDYHSYLVTSL---DLH 249
            :..   ::...|:||......||||||.||...::|.|   ..::|..: || ||::.|   |..
  Fly   210 NVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDLRLGRRT-YH-YLLSGLVMDDRW 272

  Fly   250 TVNLDEFRYGGTNITGFRLI--NEKIVSDVVRQWSIDEKGLLRSANLTTVRSETALMYDAVHLFA 312
            ...:.||  |..||||||::  |.::|.:....|...:..:...|...::.::.|||||||.:..
  Fly   273 ESEIIEF--GAINITGFRIVDTNRRLVREFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVLV 335

  Fly   313 KALHDL------------------------DTSQQIDIHPISCDG-------------------- 333
            :|.:.:                        ..|...|.:..|..|                    
  Fly   336 EAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGS 400

  Fly   334 ----------------QSTWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELT-PAG 381
                            .:.|:||..:..|::.||::|||..|||:..|.|.::.|.:||:| .:.
  Fly   401 GGMASRALDCNTAKGWVNAWEHGDKISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSA 465

  Fly   382 IRKIGTWNSTL---PDGINFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAI--PLSGN 441
            :.|:..||...   |....:.|.  :...|.|   ||:|.:|||:|..||.|.|:.|.  .|.||
  Fly   466 MVKVAEWNDDAGLQPLNAKYVRL--RPHVEFE---KNRTYIVTTVLEEPYIMLKQVAFGEKLHGN 525

  Fly   442 DQFEGYAVDLIHEISKSLGFNYKIQLVPDGSYGS-LNKLTGEWNGMIRELLEQRADLAIADLTIT 505
            ::||||..||...::|.||.||:::||.||:||| .:...|.|:||:.||:.:.||:|||.:|||
  Fly   526 NRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTIT 590

  Fly   506 FEREQAVDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFT 570
            .|||:.:||:.|||:||:||:.:||:||.|.:|||::|||.::|:.:..:|:|||::||.:::|:
  Fly   591 AERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFS 655

  Fly   571 PYEW------PAYTD-----AHGEKVESQ------------------------------------ 588
            |:||      |..:.     ||.|::.:|                                    
  Fly   656 PHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALS 720

  Fly   589 ----------------FTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTAN 637
                            |::.|..||::.:.||||||..|:::|.|:.|..|:|||||:|||||||
  Fly   721 AGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTAN 785

  Fly   638 LAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTA 702
            ||||||||||.:||.|.||||.||.::||.|..|||..|||.|:|..:.:||.:|.| |..||..
  Fly   786 LAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNS-RKHVFVP 849

  Fly   703 SNGEGVERVAKGKGSYAFLMESTSIEYVTERN-CELTQVGGMLDTKSYGIATPPNSPYRTAINSV 766
            :..||::||...||.||.|:||...|||..|. |:..:||..||||.:|||||..|..:..||..
  Fly   850 TYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLA 914

  Fly   767 ILKLQEEGKLHILKTKWWKEKRGGGKCRV----ETSKSSSAANELGLANVGGVFVVLMGGMGVAC 827
            :|.|:|.|:|..|:.|||.||   .:|..    |||.|     ||.|:||.|:|.:|:||:.|:.
  Fly   915 VLTLKENGELIKLRNKWWYEK---AECSTHKDGETSHS-----ELSLSNVAGIFYILIGGLLVSV 971

  Fly   828 VIAVCEFVWKSR 839
            .:|:.|:.::||
  Fly   972 FVAILEYCFRSR 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 106/466 (23%)
ANF_receptor 42..378 CDD:279440 98/432 (23%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 187/436 (43%)
Lig_chan 547..823 CDD:278489 135/343 (39%)
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 105/460 (23%)
ANF_receptor 55..461 CDD:279440 98/431 (23%)
PBP2_iGluR_AMPA 497..938 CDD:270433 190/444 (43%)
Lig_chan 632..967 CDD:278489 135/343 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.860

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