DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and Nmdar1

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:945 Identity:231/945 - (24%)
Similarity:394/945 - (41%) Gaps:187/945 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VLVLPLLLLQLIL--------NCRKAQSLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILP 62
            |...||..|.::|        ....|...|....|||:...:|..:.  |...:..:|.|:..:|
  Fly     7 VFCRPLFGLAIVLLVAPIDAAQRHTASDNPSTYNIGGVLSNSDSEEH--FSTTIKHLNFDQQYVP 69

  Fly    63 RS-------------------------------KLVAQIERISPFDSFHAGKRVCGLLNIGVAAI 96
            |.                               .:|...|:.|...|..|.....|..:|.|..|
  Fly    70 RKVTYYDKTIRMDKNPIKTVFNVCDKLIENRVYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVIGI 134

  Fly    97 FGPQSSHTASHVQSICDNMEIPHLENRWDYRLRRESCLVNLYPHPNTLSKAYVDIVRHWGWKTFT 161
                ||..|:....   |:.:..|..            |..|.|.   :..:::::.|:.:....
  Fly   135 ----SSRDAAFSDK---NIHVSFLRT------------VPPYYHQ---ADVWLEMLSHFAYTKVI 177

  Fly   162 IIYENN-DGIVRLQELLKAHGMTPFPITVRQLSDSGDYRPLLKQI----------------KNSA 209
            ||:.:: ||...|..         |..|.:...|..|.|..::.|                ..:|
  Fly   178 IIHSSDTDGRAILGR---------FQTTSQTYYDDVDVRATVELIVEFEPKLESFTEHLIDMKTA 233

  Fly   210 EAHI-VLDCSTERIHEVLKQAQQIGMMSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFRLINEKI 273
            ::.: ::..|||....:.:.|.:..|..:.|.::||...|.:.|..:      .:.|.:|  |..
  Fly   234 QSRVYLMYASTEDAQVIFRDAGEYNMTGEGHVWIVTEQALFSNNTPD------GVLGLQL--EHA 290

  Fly   274 VSDVVRQWSIDEKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPISC-DGQSTW 337
            .||         ||.:|               |:|::.|.|:.::.:::.|...|..| |....|
  Fly   291 HSD---------KGHIR---------------DSVYVLASAIKEMISNETIAEAPKDCGDSAVNW 331

  Fly   338 QHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTP------AGIRKIGTWNSTLPDGI 396
            :.|..|..|:|...:.|.|..:.||..|.|.....|::.:..      .|.....:..:.:...|
  Fly   332 ESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVGKFSYDSMRAKMRMRI 396

  Fly   397 NFTRTF--SQKQQEIEANLKNKTLVVTTILSNPY------------CMRKESAIPLSGN-----D 442
            |.:...  .:::::.|..:....|.:.||...|:            |...|...||..|     :
  Fly   397 NDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDDEFRCEPDERPCPLFNNSDATAN 461

  Fly   443 QF--EGYAVDLIHEISKSLGFNYKIQLVPDGSYGS--LNKLTG------EWNGMIRELLEQRADL 497
            :|  .||.:||:.|:||.:.|.|.:.|.|||.:|.  |...||      ||.|:|.||:.:|||:
  Fly   462 EFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADM 526

  Fly   498 AIADLTITFEREQAVDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVL 562
            .:|.|||..||.:.::|:.||...|::||.:|| .:...|.|||.|.|..:||.:..:...|:::
  Fly   527 IVAPLTINPERAEYIEFSKPFKYQGITILEKKP-SRSSTLVSFLQPFSNTLWILVMVSVHVVALV 590

  Fly   563 LFILAKFTPYE--WPAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGC-DFLPKALSTRMVAGIWW 624
            |::|.:|:|:.  ..:::|::.||.   ..|.:.:|||.|.|:..|. :..|::.|.|::..:|.
  Fly   591 LYLLDRFSPFGRFKLSHSDSNEEKA---LNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWA 652

  Fly   625 FFTLIMISSYTANLAAFLTVERMDSPIESAEDLAKQT---RIKYGALKGGSTAAFFRDSKISTYQ 686
            .|.:|:::||||||||||.:||..:.:....|...:.   .:....:||.|...:||  :.....
  Fly   653 GFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDMYFR--RQVELS 715

  Fly   687 RMWSFMESARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTKSYGI 751
            .|:..||:..    .|:..:.::.|.||| ..||:.:|:.:||...::|||...|.:.....|||
  Fly   716 NMYRTMEANN----YATAEQAIQDVKKGK-LMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGI 775

  Fly   752 ATPPNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVF 816
            .....||:..|:...||:..|.|.:..|..:|.........|.:    .....|.|||.|:.|||
  Fly   776 GLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCEL----FEKTPNTLGLKNMAGVF 836

  Fly   817 VV----LMGGMGVACVIAVCEFVWKSRKVAVEERL 847
            ::    :.||:|    :.:.|.::|..:|..::||
  Fly   837 ILVGVGIAGGVG----LIIIEVIYKKHQVKKQKRL 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 78/421 (19%)
ANF_receptor 42..378 CDD:279440 73/385 (19%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 126/402 (31%)
Lig_chan 547..823 CDD:278489 80/285 (28%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 85/457 (19%)
ANF_receptor 58..371 CDD:279440 72/375 (19%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 126/411 (31%)
HisJ 451..>558 CDD:223904 42/106 (40%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 46/138 (33%)
Lig_chan 575..838 CDD:278489 79/276 (29%)
CaM_bdg_C0 854..882 CDD:287524 4/14 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
66.060

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