DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and spp-22

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001025004.2 Gene:spp-22 / 3565459 WormBaseID:WBGene00044283 Length:149 Species:Caenorhabditis elegans


Alignment Length:130 Identity:26/130 - (20%)
Similarity:45/130 - (34%) Gaps:34/130 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   559 VSVLLFILAKFTPYEWPAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIW 623
            :||.:|.|....||:    |:|...:.:...|........:..:....||     |..|.|.|:.
 Worm    10 ISVSIFYLCYAHPYK----TNAKDLEKDRMLTTNEYYVEKVNQMAGISCD-----LCMRAVYGVN 65

  Fly   624 WFFTLIMISSYTANLAAFLTVERMDSPI---ESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTY 685
            :.|..:.        ..|:.:.|:|...   |..||:::..|              |..:|:..|
 Worm    66 YDFIQLK--------KDFIEMIRLDCEALFHERPEDISECIR--------------FLTTKVEKY 108

  Fly   686  685
             Worm   109  108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377
ANF_receptor 42..378 CDD:279440
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 26/130 (20%)
Lig_chan 547..823 CDD:278489 26/130 (20%)
spp-22NP_001025004.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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