DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and GRIA1

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:840 Identity:329/840 - (39%)
Similarity:503/840 - (59%) Gaps:63/840 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQIERISPFDSFHAGKRVCGLLNIGVAA 95
            ::.|||......:..|||.|:.::.....:||      ||:.::..|||....|.|...:.||.|
Human    36 EVWGLFPNQQSQEHAAFRFALSQLTEPPKLLP------QIDIVNISDSFEMTYRFCSQFSKGVYA 94

  Fly    96 IFGPQSSHTASHVQSICDNMEIPHL--------ENRWDYRLRRESCLVNLYPHPNTLSKAYVDIV 152
            |||.....|.:.:.|.|..:.:..:        .|::..:||.|            |..|.:.|:
Human    95 IFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPE------------LQDALISII 147

  Fly   153 RHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPIT---VRQLSDSGDYRPLLKQIKNSAEAHIV 214
            .|:.|:.|..||:.:.|:..||::|.......:.:|   :...::.| ||.|.:.::...|..:|
Human   148 DHYKWQKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEG-YRMLFQDLEKKKERLVV 211

  Fly   215 LDCSTERIHEVLKQAQQIGMMSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFRLIN--EKIVSDV 277
            :||.:||::.:|.|..::......:.|::.:|....::|::|:..|.|:|||:|:|  :.|.:.:
Human   212 VDCESERLNAILGQIIKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPAKI 276

  Fly   278 VRQWSIDEKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPISCDGQS------T 336
            ::||...:.......:....:..:||.||.|.:.|:|...| ..|:|||......|..      .
Human   277 MQQWKNSDARDHTRVDWKRPKYTSALTYDGVKVMAEAFQSL-RRQRIDISRRGNAGDCLANPAVP 340

  Fly   337 WQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPAGIRKIGTWNSTLPDGINFTRT 401
            |..|..:...::.|..:|||..::|:.:|.||::.|.::|:...||||||.||.  .|......|
Human   341 WGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNE--DDKFVPAAT 403

  Fly   402 FSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSLGFNYKIQ 466
            .:|...: .::::|:|.:|||||.:||.|.|::|....|||::|||.|:|..||:|.:|::|:::
Human   404 DAQAGGD-NSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLE 467

  Fly   467 LVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSILYRKPI 531
            :|.||.||:.:..|..||||:.||:..|||:|:|.||||..||:.:||:.|||:||:||:.:||.
Human   468 IVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQ 532

  Fly   532 KQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWPAYTDAHGEKVE---------- 586
            |..|.:||||.||:.::|:.:..||:||||:||::::|:||||      |.|:.|          
Human   533 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEW------HSEEFEEGRDQTTSDQ 591

  Fly   587 -SQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAAFLTVERMDSP 650
             ::|.:.|.:||::|:.||||||..|::||.|:|.|:|||||||:|||||||||||||||||.||
Human   592 SNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP 656

  Fly   651 IESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNGEGVERVAKGK 715
            |||||||||||.|.||.|:.|||..|||.|||:.:::||::|:||.||||..:..||:.||.|.|
Human   657 IESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSK 721

  Fly   716 GSYAFLMESTSIEYVTERN-CELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQEEGKLHIL 779
            |.||:|:|||..||:.:|. |:..:|||.||:|.||||||..|..|..:|..:|||.|:|.|..|
Human   722 GKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKL 786

  Fly   780 KTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFVWKSR 839
            |.|||.:|   |:|......|....:.|.|:||.|||.:|:||:|:|.::|:.||.:|||
Human   787 KNKWWYDK---GECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSR 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 102/384 (27%)
ANF_receptor 42..378 CDD:279440 90/354 (25%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 202/381 (53%)
Lig_chan 547..823 CDD:278489 149/287 (52%)
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385 102/384 (27%)
ANF_receptor 47..382 CDD:279440 90/354 (25%)
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 205/389 (53%)
Lig_chan 548..827 CDD:278489 149/287 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.820

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