DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and F59E12.8

DIOPT Version :10

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001364714.1 Gene:F59E12.8 / 186629 WormBaseID:WBGene00019123 Length:379 Species:Caenorhabditis elegans


Alignment Length:389 Identity:82/389 - (21%)
Similarity:146/389 - (37%) Gaps:78/389 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   486 MIRELLEQRADLAIADLTITFEREQAVDFTTPF-MNLGVSILYRKPIKQPPNLFSFLSPLSLDVW 549
            |:.::.:.|.|:|.....:|.:|...:.||.|. ..:....|...|.|....:|.| .|.|..||
 Worm     1 MLGDIQKGRIDMACGRFRMTADRANVLTFTYPTQFEVNQVYLITDPQKSVDVVFLF-HPFSTTVW 64

  Fly   550 IYMATAYLGVSVLLFILAKFTPYEWPAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDFLPKAL 614
            :.::...|.|:::.||| :|..::....|::..|.:::....:....|.:...:.:...|    .
 Worm    65 LLLSLTVLVVAIVFFIL-RFVEFKSTKETESSYECIQNSIFQVLLSTFNLEIRVAKKSTF----F 124

  Fly   615 STRMVAGIW---WFFTLIMISSYTANLAAFLTV-ERMDSPIESAEDLAKQTRIKYGALKGGSTAA 675
            :..:.:.||   ||.  :.|..||:.|:..:.| ::...|.::.          ||         
 Worm   125 AFHLFSTIWLLAWFH--VFIDFYTSELSGMMVVSDKRQVPFDNF----------YG--------- 168

  Fly   676 FFRDSKISTYQRMWSFMESAR-----PSVFTASNGEGV--ERVAKGKGSYAFLMESTSIEYVTER 733
            |....:...|:   .|..||.     |...|.|....:  |.::|....|..||:....|:|:.|
 Worm   169 FIDHLRKGNYR---LFTPSADRIPECPHEITTSKCNAIFSEILSKHPPEYGDLMQLNDREFVSSR 230

  Fly   734 NCELTQVG---GMLDTKSYGIATP-----------------------PNSPYRTAINSVILK-LQ 771
            ...|...|   ....:..:.|.|.                       |..||...:|.:|:| |.
 Worm   231 KIPLVGFGWYPAQRISSKFSIWTQELFHSDIWLIRDFPVCPAAYIVRPTFPYLDELNEMIIKVLP 295

  Fly   772 EEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFV 835
            ...::....|..:.|....||    .||||.:.|:|     ..:|::.:.|..|:.:..:.|.|
 Worm   296 AFSRIDNHYTPAYPELTLTGK----PSKSSFSLNQL-----SSIFLIHLLGAFVSTLFLIAELV 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..400 CDD:380605
Periplasmic_Binding_Protein_Type_2 415..785 CDD:473866 68/337 (20%)
F59E12.8NP_001364714.1 None
Blue background indicates that the domain is not in the aligned region.

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