DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and glr-1

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_498887.2 Gene:glr-1 / 176204 WormBaseID:WBGene00001612 Length:962 Species:Caenorhabditis elegans


Alignment Length:921 Identity:318/921 - (34%)
Similarity:494/921 - (53%) Gaps:129/921 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLQLILNCRKAQSLPD--IIKIGGLFHPADDHQEL------AFRQAVDRINADRSILPRSKLVAQ 69
            :|..:.|....|..|.  |||..|      :::|:      |.....|.||: |..:| .||.  
 Worm    13 VLFTVFNLTVVQPYPSHIIIKSFG------NNEEVSRVALKAMEYTSDHINS-RDDVP-FKLA-- 67

  Fly    70 IERISPFD----------SFHAGKRVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIP-----H 119
                  ||          |::....||..|..|..|:...........::.:.|.:|:|     .
 Worm    68 ------FDHRVVEEGAAVSWNMVNAVCDELKEGAMALLSSVDGKGREGIRGVSDALEMPLVSLTA 126

  Fly   120 LENRWDYRLRRESCLVNLYPHPNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQEL---LKAHG 181
            |.|. |::.::...|..:...| .:|:...|.:.|.||....::.:.....:.|..|   |:...
 Worm   127 LSND-DHQQQQFGNLFEVSVRP-PISELLADFIVHKGWGEVLVLIDPVHASLHLPSLWRHLRTRT 189

  Fly   182 MTPFPITVRQL-SDSGDYRPLLKQ---IKNSAEAHIVLDC-STERIHEVL---KQAQQIGMMSDY 238
            .|....::..| :|...:...|.|   ::|:....|::|| |.:|:.::|   :.||  ...::|
 Worm   190 NTSVKASMFDLPADEKQFEAYLMQFNMMRNNETNRILIDCASPKRLKKLLINIRSAQ--FNQANY 252

  Fly   239 HSYLVTSLDLHTVNLDEFRYGGTNITGFRLINEKIVSDVVRQWSIDEKGLLRSANL---TTVRSE 300
            | |::.:.|....:.:.|:.|..||:||.:||:    |....||: :|.|..|::|   ..|..|
 Worm   253 H-YVLANYDFLPYDQEMFQNGNINISGFNIINK----DGREYWSL-KKHLKTSSSLGGGDDVSVE 311

  Fly   301 TALMYDAV----HLFAKALHDLDTSQQIDIH--------------PISCDGQ----------STW 337
            .|:.:||:    |.|||.|...|:.    .|              .|.||..          |::
 Worm   312 AAVGHDAMLVTWHGFAKCLQANDSL----FHGTFRHRRFFNRGFPGIYCDPLSDRSHPNRPFSSF 372

  Fly   338 QHGFSL---INYMKIVEMKG-LTNVIKFDHQGFRTDFMLDIVEL---TPA--GIRKIGTWNSTLP 393
            :||.::   ...|||...:| ||..|:||..|.|.:|.:.||:|   |.|  ..:::..|.    
 Worm   373 EHGKTIGVAFRNMKIGHKEGTLTGNIEFDRFGNRKNFDVSIVDLVSNTKATFNSKEVLAWR---- 433

  Fly   394 DGINF--TRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLS------GNDQFEGYAVD 450
            .|:.|  .||.:|..::.:.:.|:..::|.|.|..|:.|.|...:.::      ||::|||:.:|
 Worm   434 QGVGFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFCID 498

  Fly   451 LIHEISKSL-GFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDF 514
            |:..::..: .|||:|:|   |:.....:..|.|:|||.|||..||...:|.|||..|||:.|||
 Worm   499 LLKLLADKIEEFNYEIKL---GTKAGSKQADGSWDGMIGELLSGRAHAVVASLTINQERERVVDF 560

  Fly   515 TTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWPA-YT 578
            :.|||..|:||:.:||.||..::|||:.|||.::|:|:..||:||||::|::::|:||||.. .|
 Worm   561 SKPFMTTGISIMIKKPDKQEFSVFSFMQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEET 625

  Fly   579 DAHGEKVESQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAAFLT 643
            ...|..:.:.|::.||:||.:.:.||||.|.||:::|.|:.:..|||||:|::||||||||||||
 Worm   626 SRGGFTISNDFSVYNCLWFTLAAFMQQGTDILPRSISGRIASSAWWFFTMIIVSSYTANLAAFLT 690

  Fly   644 VERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNGEGV 708
            :|:|.:||||.||||||::||||...|||||:||:.|.:..|||||.:|||..|.||.||..||:
 Worm   691 LEKMQAPIESVEDLAKQSKIKYGIQGGGSTASFFKYSSVQIYQRMWRYMESQVPPVFVASYAEGI 755

  Fly   709 ERVAKGKGSYAFLMESTSIEYV-TERNCELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQE 772
            |||...||.||||:|:|:.||. |.:.|:..:||..|::..||||||..|.::..||..||.|||
 Worm   756 ERVRSHKGRYAFLLEATANEYENTRKPCDTMKVGANLNSIGYGIATPFGSDWKDHINLAILALQE 820

  Fly   773 EGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFVWK 837
            .|:|..|:.|||.::   |:|....:...|:|: |.|:.|.|:|.:|||||.::.:.|:.||:::
 Worm   821 RGELKKLENKWWYDR---GQCDAGITVDGSSAS-LNLSKVAGIFYILMGGMVISMLAALGEFLYR 881

  Fly   838 SRKVAVEERLS 848
            ||   :|.|.|
 Worm   882 SR---IEARKS 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 105/437 (24%)
ANF_receptor 42..378 CDD:279440 99/405 (24%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 179/378 (47%)
Lig_chan 547..823 CDD:278489 137/277 (49%)
glr-1NP_498887.2 PBP1_iGluR_AMPA 10..439 CDD:107375 111/459 (24%)
ANF_receptor 44..417 CDD:279440 97/396 (24%)
Periplasmic_Binding_Protein_Type_2 457..832 CDD:304360 178/377 (47%)
Lig_chan 593..867 CDD:278489 137/277 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7871
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.850

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