DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and gria2a

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:857 Identity:325/857 - (37%)
Similarity:501/857 - (58%) Gaps:75/857 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IKIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQIERISPFDSFHAGKRVCGLLNIGVA 94
            ::|||||....|.:..|||..:.:...     ...:|...|:.:...:||......|...:.||.
Zfish    22 VQIGGLFPRGADQEYSAFRIGMVQFGT-----AEFRLTPHIDNLEVANSFAITNCFCSQFSRGVY 81

  Fly    95 AIFGPQSSHTASHVQSICDNMEIPHLE--------NRWDYRLRRESCLVNLYPHPNTLSKAYVDI 151
            ||||.....:.:.:.|.|:.:.:..:.        |::..::|.:            :....:.:
Zfish    82 AIFGFYDKKSVNTITSFCETLHVSFITPSFPADGLNQFVLQMRPD------------IKGPLISL 134

  Fly   152 VRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPITVRQLSDSGD------YRPLLKQIKNSAE 210
            |.::.|:.|..:|:::.|:..||.:|.......:.:|...:.:..|      ||.|.:.::|..|
Zfish   135 VEYYKWEKFAYLYDSDRGLSTLQAVLDTAAERKWQVTAINVGNLKDEWKDEAYRSLFQDLENKNE 199

  Fly   211 AHIVLDCSTERIHEVLKQAQQIGM-MSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFRLI--NEK 272
            ..::|||..:::.::::|...||. :..|| |::.:......:|.:.:|||.|::||:::  ::.
Zfish   200 RRVILDCEQDKVKDIMEQVITIGRHVKGYH-YIIANFGFVDGDLSKIQYGGANVSGFQIVDFDDP 263

  Fly   273 IVSDVVRQWSIDEKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPISCDGQS-- 335
            :|:...::|...|:.....|: :.:|..:||.||||.:..:|...|. .|:|||.....:|..  
Zfish   264 LVAKFDQRWEALEEKEYPGAD-SRIRYTSALTYDAVQVMTEAFRFLH-KQRIDISRRGNNGDCLA 326

  Fly   336 ----TWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPAGIRKIGTWNSTLPDGI 396
                .|..|..:...:|.|.:.|||..|:||..|.|.::.::::||..:|..|||.||......:
Zfish   327 NPAVPWAQGVEIERALKQVRVDGLTGNIQFDQYGRRVNYTVNVMELKNSGPVKIGYWNEMDKMAV 391

  Fly   397 NFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSLGF 461
            ..:..|......:|    |||::|||||..||.|.|::|...:.|:::|||.|||..||:|..||
Zfish   392 TKSDLFPNDTMGME----NKTVIVTTILEAPYVMLKKNAELFTDNERYEGYCVDLAAEIAKHCGF 452

  Fly   462 NYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSIL 526
            .|::::|.||.||:.:..|..||||:.||:..:||:|:|.||||..||:.:||:.|||:||:||:
Zfish   453 KYQLRIVADGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSLGISIM 517

  Fly   527 YRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWPAYTDAHGEKVE----- 586
            .:||.|..|.:||||.||:.::|:.:..||:||||:||::::|:||||      |.|:.|     
Zfish   518 IKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEW------HTEEFEDGQLG 576

  Fly   587 -----SQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAAFLTVER 646
                 ::|.:.|.:||::|:.||||||..|::||.|:|.|:|||||||:||||||||||||||||
Zfish   577 PSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVER 641

  Fly   647 MDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNGEGVERV 711
            |.|||||||||||||.|.||.|..|||..|||.|||:.:.:||.:|:||.||||..:..|||.||
Zfish   642 MVSPIESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIALFDKMWQYMKSAEPSVFVKNTVEGVLRV 706

  Fly   712 AKGKGSYAFLMESTSIEYVTERN-CELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQEEGK 775
            .|.||.||:|:|||..||:.:|. |:..:|||.||:|.||||||..|..|.|:|..:|||.|:|.
Zfish   707 RKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNAVNLAVLKLNEQGL 771

  Fly   776 LHILKTKWWKEK----RGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFVW 836
            |..||.|||.:|    .|||:.:.:||       .|.|:||.|||.:|:||:|:|.::|:.||.:
Zfish   772 LDKLKNKWWYDKGECGSGGGESKEKTS-------ALSLSNVAGVFYILVGGLGLAMLVALVEFCY 829

  Fly   837 KSRKVAVEERLS 848
            |||..|...:::
Zfish   830 KSRAEAKRMKMT 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 93/388 (24%)
ANF_receptor 42..378 CDD:279440 80/358 (22%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 204/380 (54%)
Lig_chan 547..823 CDD:278489 153/290 (53%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 93/387 (24%)
ANF_receptor 51..373 CDD:279440 77/336 (23%)
PBP2_iGluR_AMPA 406..783 CDD:270433 205/382 (54%)
Lig_chan 538..816 CDD:278489 153/290 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.820

Return to query results.
Submit another query.