DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and Grik2

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_011241422.1 Gene:Grik2 / 14806 MGIID:95815 Length:943 Species:Mus musculus


Alignment Length:889 Identity:410/889 - (46%)
Similarity:595/889 - (66%) Gaps:76/889 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AQSLPDIIKIGGLFHPADD----HQELAFRQAVDRINADRSILPRSKLVAQIERISPFDSFHAGK 83
            :|....:::.||:|...:.    .:|||||.||:.||.:|::||.:.|....::|:.:|||.|.|
Mouse    29 SQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASK 93

  Fly    84 RVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHLENRWDYRL--RRESCLVNLYPHPNTLSK 146
            :.|..|::||||||||..|.:|:.|||||:.:.:||::.||.:::  .::|..|:|||..::||:
Mouse    94 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSR 158

  Fly   147 AYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPITVRQL-SDSGDYRPLLKQIKNSAE 210
            |.:|:|:.:.|||.|::|:::.|::|||||:||.......:.:||| :|:.|.:||||::|...|
Mouse   159 AILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKE 223

  Fly   211 AHIVLDCSTERIHEVLKQAQQIGMMSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFRLINEK--I 273
            .|::.|||.|....:||||..:|||::|:.|:.|:|||..::::.:||.|.|:||||::|.:  .
Mouse   224 FHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQ 288

  Fly   274 VSDVVRQWSID--------EKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPIS 330
            ||.::.:||::        :.||| ...:||   :.||||||||:.:.|:...   .|:.:..:.
Mouse   289 VSSIIEKWSMERLQAPPKPDSGLL-DGFMTT---DAALMYDAVHVVSVAVQQF---PQMTVSSLQ 346

  Fly   331 CDGQSTWQHGFSLINYMKIVEMKGLTNVIKFDH-QGFRTDFMLDIVELTPAGIRKIGTWNSTLPD 394
            |:....|:.|...::.:|....:|||..|.|:. .|.||||.||::.|...|:.|||||:.:  .
Mouse   347 CNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPS--S 409

  Fly   395 GINFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSL 459
            |:|.|.:...|...|..:|.|::|:|||||..||.:.|:|..||.|||:||||.:||:.|:|..|
Mouse   410 GLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTIL 474

  Fly   460 GFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVS 524
            ||.|:|:||.||.||:.:.:.|:||||:|||::.:||||:|.|.||:.||:.:||:.|||.||:|
Mouse   475 GFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGIS 539

  Fly   525 ILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAK--------------------- 568
            ||||||....|.:||||:|||.|:|:|:..||||||.:||::|:                     
Mouse   540 ILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARQSKFSWFKYPNCSHYHHSQRC 604

  Fly   569 --------------FTPYEW--PAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDFLPKALSTR 617
                          |:||||  |...:...:.||:.|||||..||.:|:|||||.:.:|||||||
Mouse   605 LCTQHLESYMELCLFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTR 669

  Fly   618 MVAGIWWFFTLIMISSYTANLAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKI 682
            :|.|||||||||:|||||||||||||||||:|||:||:||||||:|:|||::.|:|..||:.|||
Mouse   670 IVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKI 734

  Fly   683 STYQRMWSFMESARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTK 747
            |||.:||:||.|.|.||...||.||::||.  ...||||||||:||:||:|||.|||:||::|:|
Mouse   735 STYDKMWAFMSSRRQSVLVKSNEEGIQRVL--TSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSK 797

  Fly   748 SYGIATPPNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANV 812
            .||:.||..||||..|...||:||||||||::|.|||   ||.| |..|.||.:||   ||:.|:
Mouse   798 GYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWW---RGNG-CPEEESKEASA---LGVQNI 855

  Fly   813 GGVFVVLMGGMGVACVIAVCEFVWKSRKVA-VEER--LSAILNE 853
            ||:|:||..|:.::..:||.||::||:|.| :|:|  .||::.|
Mouse   856 GGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEE 899

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 147/383 (38%)
ANF_receptor 42..378 CDD:279440 136/349 (39%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 225/406 (55%)
Lig_chan 547..823 CDD:278489 168/312 (54%)
Grik2XP_011241422.1 PBP1_iGluR_Kainate 37..414 CDD:380605 148/385 (38%)
Periplasmic_Binding_Protein_Type_2 430..835 CDD:389745 226/409 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 262 1.000 Domainoid score I1931
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40717
Inparanoid 1 1.050 803 1.000 Inparanoid score I497
Isobase 1 0.950 - 0 Normalized mean entropy S3952
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - otm42822
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.830

Return to query results.
Submit another query.