DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and Grid2

DIOPT Version :10

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_032193.1 Gene:Grid2 / 14804 MGIID:95813 Length:1007 Species:Mus musculus


Alignment Length:928 Identity:276/928 - (29%)
Similarity:434/928 - (46%) Gaps:166/928 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VLPLLLLQLILNCR--KAQSLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQI 70
            |.||||.......|  ...:...||.||.:|..:....:..||.||..:|.:..||...|:...:
Mouse     3 VFPLLLFLSFCWSRTWDLATADSIIHIGAIFDESAKKDDEVFRTAVGDLNQNEEILQTEKITFSV 67

  Fly    71 ERISPFDSFHAGKRVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHL--------------- 120
            ..:...:.|.|.:..|.|:|.|:.|:.......:|..:||:.|.|.||||               
Mouse    68 TFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGCG 132

  Fly   121 ---ENR-WDYRLRRESCLVNLYPHPNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHG 181
               .|| .||.|       ::.| |..|::..:.:|..:.|:.|.|.|::...|..:||.|.   
Mouse   133 LTRSNRNDDYTL-------SVRP-PVYLNEVILRVVTEYAWQKFIIFYDSEYDIRGIQEFLD--- 186

  Fly   182 MTPFPITVRQLSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHE-------------VLKQAQQIG 233
                     ::|..| ....|::::|:....|.....|.||.|             |:..|....
Mouse   187 ---------KVSQQG-MDVALQKVENNINKMITTLFDTMRIEELNRYRDTLRRAILVMNPATAKS 241

  Fly   234 MMSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFRLINEKIVSDVVRQWSIDEKGLLR-------- 290
            .:|:.....:.:.|.|.:.::|            .||:..|.::||: ||....::|        
Mouse   242 FISEVVETNLVAFDCHWIIINE------------EINDVDVQELVRR-SIGRLTIIRQTFPVPQN 293

  Fly   291 ------------SANLTTVRSETA--------LMYDAVHLFAKALH-DLDTSQQIDIHPISC--D 332
                        |::|...:...|        .:||.|.|.|.|.| .|:..:...:..:||  .
Mouse   294 ISQRCFRGNHRISSSLCDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRK 358

  Fly   333 GQSTWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIV-----ELTPAGIRKIGTWNSTL 392
            ....||.|.|::..:|...:.|||..::|...|...:...:|:     |....|:||:|.||.. 
Mouse   359 NSKPWQGGRSMLETIKKGGVNGLTGDLEFGENGGNPNVHFEILGTNYGEELGRGVRKLGCWNPV- 422

  Fly   393 PDGINFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISK 457
             .|:|.:.|    .:::|.|::...|.|.|:|..|:.|..|:.  |....:::|:::|::..:|.
Mouse   423 -TGLNGSLT----DKKLENNMRGVVLRVVTVLEEPFVMVSENV--LGKPKKYQGFSIDVLDALSN 480

  Fly   458 SLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLG 522
            .|||||:|.:.||..|||..: .|.|||::.||:.:|||:.|:.||||.:||..|||||.:|:..
Mouse   481 YLGFNYEIYVAPDHKYGSPQE-DGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYS 544

  Fly   523 VSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTP--YEWPAYTDAHGEKV 585
            |.:|.|: .::..::|:.|:|..|.:|..:|...|.|.:|:::|....|  .:..:.|..     
Mouse   545 VGVLLRR-AEKTVDMFACLAPFDLSLWACIAGTVLLVGLLVYLLNWLNPPRLQMGSMTST----- 603

  Fly   586 ESQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAAFLTVERMDSP 650
                ||.|.|||..||.:|||.:.....|:|||:.|.||.|.||:|||||||||||||:.|::|.
Mouse   604 ----TLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTITRIESS 664

  Fly   651 IESAEDLAKQTRIKYGA-----------LKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASN 704
            |:|.:||:|||.|.||.           :||  ...|.||   |.|.:||        .:...||
Mouse   665 IQSLQDLSKQTDIPYGTVLDSAVYQHVRMKG--LNPFERD---SMYSQMW--------RMINRSN 716

  Fly   705 GE---------GVERVAKGKGSYAFLMESTSIEYV--TERNCELTQVGGMLDTKSYGIATPPNSP 758
            |.         |:::|.  .|:|||:.::..:|||  .:.:|....||..:..:.||||....||
Mouse   717 GSENNVLESQAGIQKVK--YGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSP 779

  Fly   759 YRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETS-KSSSAANELGLANVGGVFVVLMGG 822
            ||...:..||:||:.|.:.|||.|||.:   .|:|.:.:| .:......|.:.::.|||.:|..|
Mouse   780 YRDVFSQRILELQQSGDMDILKHKWWPK---NGQCDLYSSVDAKQKGGALDIKSLAGVFCILAAG 841

  Fly   823 MGVACVIAVCEFVWKSRK 840
            :.::|:|||.|..|..||
Mouse   842 IVLSCLIAVLETWWSRRK 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..400 CDD:380605 100/436 (23%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:473866 147/393 (37%)
Grid2NP_032193.1 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345 80/354 (23%)
Periplasmic_Binding_Protein_type1 28..429 CDD:471960 100/436 (23%)
PBP2_iGluR_delta_2 440..806 CDD:270449 147/393 (37%)
Interaction with AP4M1. /evidence=ECO:0000250|UniProtKB:Q63226 921..991
PDZ-binding 1005..1007
Blue background indicates that the domain is not in the aligned region.

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