DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and Gria2

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:859 Identity:336/859 - (39%)
Similarity:506/859 - (58%) Gaps:76/859 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IKIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQIERISPFDSFHAGKRVCGLLNIGVA 94
            |:|||||....|.:..|||..:.:.:..     ..:|...|:.:...:||......|...:.||.
Mouse    27 IQIGGLFPRGADQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVY 86

  Fly    95 AIFGPQSSHTASHVQSICDNMEIPHLENRWDYRLRRESCLVNLYP----HP------NTLSKAYV 149
            ||||.....:.:.:.|.|..:.:              |.:...:|    ||      ..|..|.:
Mouse    87 AIFGFYDKKSVNTITSFCGTLHV--------------SFITPSFPTDGTHPFVIQMRPDLKGALL 137

  Fly   150 DIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPITVRQL----SDSGD--YRPLLKQIKNS 208
            .::.::.|..|..:|:::.|:..||.:|.:.....:.:|...:    :|..|  ||.|.:.::..
Mouse   138 SLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELK 202

  Fly   209 AEAHIVLDCSTERIHEVLKQAQQIGM-MSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFRLI--N 270
            .|..::|||..:::::::.|...||. :..|| |::.:|.....:|.:.::||.|::||:::  :
Mouse   203 KERRVILDCERDKVNDIVDQVITIGKHVKGYH-YIIANLGFTDGDLLKIQFGGANVSGFQIVDYD 266

  Fly   271 EKIVSDVVRQWSIDEKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPISCDGQS 335
            :.:||..:.:||..|:.....|:..|::..:||.||||.:..:|..:| ..|:|:|......|..
Mouse   267 DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNL-RKQRIEISRRGNAGDC 330

  Fly   336 ------TWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPAGIRKIGTWN----- 389
                  .|..|..:...:|.|:::||:..||||..|.|.::.::|:||...|.||||.|:     
Mouse   331 LANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 395

  Fly   390 ----STLPDGINFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVD 450
                :.||.| |.|           :.|:|||:||||||.:||.|.|::...|.||:::|||.||
Mouse   396 VVTLTELPSG-NDT-----------SGLENKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVD 448

  Fly   451 LIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFT 515
            |..||:|..||.||:.:|.||.||:.:..|..||||:.||:..:||:|||.||||..||:.:||:
Mouse   449 LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFS 513

  Fly   516 TPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWPAYTDA 580
            .|||:||:||:.:||.|..|.:||||.||:.::|:.:..||:||||:||::::|:||||......
Mouse   514 KPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFE 578

  Fly   581 HGEKVES-----QFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAA 640
            .|.:.:|     :|.:.|.:||::|:.||||||..|::||.|:|.|:|||||||:||||||||||
Mouse   579 DGRETQSSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 643

  Fly   641 FLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNG 705
            |||||||.|||||||||:|||.|.||.|..|||..|||.|||:.:.:||::|.||.||||..:..
Mouse   644 FLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTA 708

  Fly   706 EGVERVAKGKGSYAFLMESTSIEYVTERN-CELTQVGGMLDTKSYGIATPPNSPYRTAINSVILK 769
            |||.||.|.||.||:|:|||..||:.:|. |:..:|||.||:|.||||||..|..||.:|..:||
Mouse   709 EGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLK 773

  Fly   770 LQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEF 834
            |.|:|.|..||.|||.:|   |:|..:.|.|....:.|.|:||.|||.:|:||:|:|.::|:.||
Mouse   774 LSEQGVLDKLKNKWWYDK---GECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 835

  Fly   835 VWKSRKVAVEERLS 848
            .:|||..|...:::
Mouse   836 CYKSRAEAKRMKMT 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 101/399 (25%)
ANF_receptor 42..378 CDD:279440 85/360 (24%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 206/375 (55%)
Lig_chan 547..823 CDD:278489 150/281 (53%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 98/390 (25%)
PBP2_iGluR_AMPA 413..794 CDD:270433 209/383 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - LDO PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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