DRSC/TRiP Functional Genomics Resources

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Protein Alignment KaiR1D and grik4

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_031761990.1 Gene:grik4 / 100490768 XenbaseID:XB-GENE-1011875 Length:962 Species:Xenopus tropicalis


Alignment Length:878 Identity:348/878 - (39%)
Similarity:520/878 - (59%) Gaps:58/878 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LVLPLLLLQLILNCRKAQSLPDIIKIGGLFHPADDHQE------LAFRQAVDRINADRSILPRSK 65
            ::.|::|:.|.|  .|:...|. ::|..:.   ||..|      |:...|.:|||.......:::
 Frog     4 VLAPMVLVLLWL--MKSAGSPS-LRIAAIL---DDPMECSRGERLSITLAKNRINRAPERQGKAR 62

  Fly    66 LVAQIERISPFDSFHAGKRVCGLLNIGVAAIFGPQ-SSHTASHVQSICDNMEIPHLENRWDYRLR 129
            |...|..:.....:...:.:|.:|..||..:.||. |..::|.:.:||...|:||::...:..||
 Frog    63 LEVDIFELLKDSEYETAETMCQILPKGVLGVLGPSYSPSSSSIISNICGEKEVPHIKVSTEEFLR 127

  Fly   130 ---RESCLVNLYPHPNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPITVRQ 191
               :....:||:|....:|.|...::|.:...|..:|....:.::.|::||:...::...::||.
 Frog   128 FQYQRFTTLNLHPSNTDISAAVATLLRFFNSTTACLICAKAECLLNLEKLLRQFLISKDCLSVRM 192

  Fly   192 LSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQIGMMSDYHSYLVTSLDLHTVNLDEF 256
            |.|:.|..||||:|::...:.|::..:....|.:|.:|.::||::.|::|:.|:|:......:..
 Frog   193 LDDTWDPTPLLKEIRDDKTSTIIVHANASMSHTILMKAAELGMVTAYYTYIFTNLEFVLQRFESP 257

  Fly   257 RYGGTNITGFRLINE------KIVSDVVRQWSIDEKGLLRSANLTTVRSETALMYDAVHLFAKAL 315
            .....||.||.:.|:      :....:.:.|   |:....|. .|......||::|||:....|:
 Frog   258 LDDRVNILGFSMFNQSHSYFKEFAHTLQQSW---EENCDHSP-FTGPALSAALLFDAVYGIVSAV 318

  Fly   316 HDLDTSQQIDIHPISCDGQSTWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPA 380
            .:|:.||:|.:.|:||.....||||.||:||:::||::|||..::|:.:|.|:::.:.|::.|..
 Frog   319 QELNRSQEIGVKPLSCGSSQIWQHGTSLMNYLRMVELEGLTGHVEFNSKGQRSNYDMKIMQYTKT 383

  Fly   381 GIRKIGTWNSTLPDGINF-TRTFSQKQQEIEANLKNKTLVVTTIL----SNPYCMRKESAIPLSG 440
            |.::||.|:.|  :|:|. .|.||....:   .|.||||:|||||    .|||.|.|.:...|.|
 Frog   384 GFQEIGQWHVT--NGLNMDKRYFSPNASD---TLVNKTLIVTTILFFLQENPYLMLKANHQELEG 443

  Fly   441 NDQFEGYAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTIT 505
            ||::||:.||::.|::..|.|||||:||.||.|| :.:|.|.|.||:.||:.::||||:|.||||
 Frog   444 NDRYEGFCVDMLKELAAILRFNYKIRLVADGVYG-VPELNGTWTGMVGELISRKADLAVAGLTIT 507

  Fly   506 FEREQAVDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFT 570
            .|||:.:||:.|||.||:|||||..:.:.|..||||.|.|..||::|..|||.||.:||::|:.|
 Frog   508 AEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLT 572

  Fly   571 PYEW-PAYTDAHG--EKVESQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMIS 632
            |||| ..:..|.|  ..:.:|::|.|.:||.:|..||||....|:|||||.|:|:||.||||:||
 Frog   573 PYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIIS 637

  Fly   633 SYTANLAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARP 697
            ||||||||||||:|||.||||.:|||.||.|:||.:.|||:..||::|:..||||||::|.|.:|
 Frog   638 SYTANLAAFLTVQRMDVPIESVDDLADQTTIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMHSKQP 702

  Fly   698 SVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTKSYGIATPPNSPYRTA 762
            |||..|..||:.||.  ..:||||:|||..||..:|||.||||||:||||.|||..|..|.:|..
 Frog   703 SVFVKSTEEGIARVL--NSNYAFLLESTMNEYYRQRNCNLTQVGGLLDTKGYGIGMPVGSAFRDE 765

  Fly   763 INSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVAC 827
            .:..||:|||...|..||.|||    .||||..|   ....|..||:.|:||:||||:.|:.||.
 Frog   766 FDLAILQLQENNCLEDLKRKWW----DGGKCPKE---EDHRAKGLGMENIGGIFVVLICGLIVAI 823

  Fly   828 VIAVCEFVWKSRKVAVEE---------RLSAIL 851
            :||:.||:|..|.....|         .||:|:
 Frog   824 LIAMLEFLWTVRNAEDSEVSVCQEMASELSSII 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 103/381 (27%)
ANF_receptor 42..378 CDD:279440 93/351 (26%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 205/376 (55%)
Lig_chan 547..823 CDD:278489 148/278 (53%)
grik4XP_031761990.1 Periplasmic_Binding_Protein_type1 23..400 CDD:415822 104/386 (27%)
PBP2_iGluR_kainate_KA1 414..788 CDD:270442 206/380 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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