DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KaiR1D and grin2b

DIOPT Version :9

Sequence 1:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:961 Identity:217/961 - (22%)
Similarity:379/961 - (39%) Gaps:215/961 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLLQLILNCRKAQSLPD----IIKIGGL-------FHPADDHQELAFRQAVDRINADRSILPRSK 65
            |::...:.| .||..|:    :|.:|..       .|..||...|             .:.||..
 Frog    14 LIILFYMGC-YAQKHPNMDIAVILVGTTDEVAIKDVHEKDDFHHL-------------PVTPRVA 64

  Fly    66 LVAQIERISPFDSFHAGKRVCGLLN----IGVAAIFGPQSSHTASHVQSICDNMEI----PHLEN 122
            ||...|.    |......|:|.|::    .||  :||..:...|  :..|.|.:.:    |.|..
 Frog    65 LVTMNES----DPKSIITRICDLMSDKKVQGV--VFGDDTDQEA--IAQILDFISVQTLTPILGI 121

  Fly   123 RWDYRL-----RRESCLVNLYPHPNTLSKAYVDIVRHWGWKTFTII------YENNDGIVR---- 172
            .....:     ...|......|.....:...::|:..:.|..|:|:      |::.:..||    
 Frog   122 HGGSSMIMADKEEASMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFENKVRSTIE 186

  Fly   173 -------LQELLKAHGMTPFPITVRQLSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQ 230
                   |:|:          |.:....|..|.: :..|:|......|:|.|:.|....:.:.|.
 Frog   187 NSFVGWELEEV----------IHLDMSLDDNDSK-IQNQLKKLQSPVILLYCTKEEATYIFEVAH 240

  Fly   231 QIGMMSDYHSYLVTSL---DLHTVNLDEFRYGGTNITGFRLINEKIVSDVVRQWSIDEKGLLRS- 291
            .:|:....::::|.||   |..||.. ||..|             ::|....:|..|....:|. 
 Frog   241 SVGLTGYGYTWIVPSLVAGDTDTVPA-EFPTG-------------LISVSYDEWDYDLPARVRDG 291

  Fly   292 -ANLTTVRSETALMYDAVHLFAKALHDLDTSQQIDIHPISCDGQSTWQHGFSLINYMKIVEMKGL 355
             |.:||..|.....::::.....:.:::..|:..:.|              .|..|:..|..:|.
 Frog   292 IAIITTAASTMLSEHNSIPQSKSSCYNIQESRVYEAH--------------MLKRYLINVTFEGR 342

  Fly   356 TNVIKFDHQGFRTDFMLDIVELTPAGIRKIGTWNSTLPDGINFTRTFSQKQQ-----EIEANL-- 413
            .  :.|...|::....|.|:.|...  ||   |...   |....|:...|..     |:..|.  
 Frog   343 N--LSFSEDGYQMHPKLVIILLNQQ--RK---WERV---GKYKDRSLKMKYYVWPVFELYPNSEE 397

  Fly   414 -KNKTLVVTTILSNPYCMRKESAIPLSGNDQ--------------------------FEGYAVDL 451
             |::.|.:.|:...|:.: .|...||||...                          .:|:.:|:
 Frog   398 HKDEHLSIVTLEEAPFVI-VEDVDPLSGTCMRNTVPCRKQIRTENRTEEGGNYIKRCCKGFCIDI 461

  Fly   452 IHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTT 516
            :.:|:|::.|.|.:.||.:|.:|  .|:.|.|||||.|::.:||.:|:..|||..||.:.|||:.
 Frog   462 LKKIAKTVKFTYDLYLVTNGKHG--KKINGTWNGMIGEVVTKRAYMAVGSLTINEERSEVVDFSV 524

  Fly   517 PFMNLGVSILY-RKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVS-VLLFILAKFTPYEWPAYTD 579
            ||:..|:|::. |......|:  :||.|.|.|||:.|....|.|| |.:|:...|:|..:.....
 Frog   525 PFIETGISVMVSRSNGTVSPS--AFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLA 587

  Fly   580 AHGEKVESQFTLLNCMWFAIGSLMQQGCDFL-PKALSTRMVAGIWWFFTLIMISSYTANLAAFLT 643
            ...|.....||:...:|...|.:........ ||..:::::..:|.||.:|.::|||||||||:.
 Frog   588 DGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMI 652

  Fly   644 VERMDSPIESAEDLAKQ------TRIKYGALKGGSTAAFFRDSKISTYQRMWSF-MESARPSVFT 701
            .|.....:....|...|      ...::|.:..|||....|::.:..:..|..| ..|.:.::.:
 Frog   653 QEEYVDQVSGLSDKKFQRPNDFSPAFRFGTVPNGSTERNIRNNYLEMHSYMVKFNQRSVQDALLS 717

  Fly   702 ASNGEGVERVAKGKGSYAFLMESTSIEYVTERN--CELTQVGG--MLDTKSYGIATPPNSPYRTA 762
            ...|:          ..||:.::..:.|:..|:  |:|..:|.  :..|..||||...:|.::..
 Frog   718 LKTGK----------LDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFATTGYGIAIQKDSGWKRQ 772

  Fly   763 INSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVAC 827
            ::..||:|..:|::..|:..|..     |.|..|  |:...:::|.:.|:.|||.:|...|.::.
 Frog   773 VDLAILQLFGDGEMEELEALWLT-----GICHNE--KNEVMSSQLDIDNMAGVFYMLAAAMALSL 830

  Fly   828 VIAVCE--FVWKSRK--------------------------VAVEERLSAI 850
            :..:.|  |.|:.|.                          |.:|:|.||:
 Frog   831 ITFIMEHLFFWQLRHCFMGVCSGKPGVVFSISRGIYSCIHGVPIEDRQSAM 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 77/407 (19%)
ANF_receptor 42..378 CDD:279440 68/370 (18%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 109/409 (27%)
Lig_chan 547..823 CDD:278489 72/288 (25%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 80/424 (19%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 111/419 (26%)
NMDAR2_C 837..1449 CDD:402274 8/45 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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