Protein Alignment KaiR1D and gria1

DIOPT Version :9

• Sequence 1: NP_650925.1
• Gene: KaiR1D / 42473
• FlyBaseID: FBgn0038837
• Length: 853
• Species: Drosophila melanogaster
• Sequence 2: XP_004912781.1
• Gene: gria1 / 100127569
• XenbaseID: XB-GENE-995621
• Length: 903
• Species: Xenopus tropicalis
• Alignment Length: 861
• Identity: 341/861 - (39%)
• Similarity: 509/861 - (59%)
• Gaps: 92/861 - (10%)

  Fly    25 SLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQIERISPFDSFHAGKRVCGLL 89
            :.|:.|:|||||......:..|||.|:.:::....:||      ||:.::..|||......|...
 Frog    20 NFPNHIQIGGLFPNQQSQEHAAFRFALSQLSEPPKLLP------QIDIVNISDSFEMTYTFCSQF 78

  Fly    90 NIGVAAIFGPQSSHTASHVQSICDNMEIPHL--------ENRWDYRLRRESCLVNLYPHPNTLSK 146
            :.||.||||.....|.:.:.|.|..:.:..:        .|::..:||.|            |..
 Frog    79 SKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVATSNQFVLQLRPE------------LQD 131

  Fly   147 AYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPIT---VRQLSDSGDYRPLLKQIKNS 208
            |.:.::.::.||.|..||:.:.|:..||::|.......:.:|   :...::.| ||.|.:.:..|
 Frog   132 ALISVIEYYKWKKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEG-YRLLFQDLDKS 195

  Fly   209 AEAHIVLDCSTERIHEVLKQA------QQIGMMSDYHSYLVTSLDLHTVNLDEFRYGGTNITGFR 267
            .:..||:||.:||::.:|.|.      ..||    || |::.:|....:::.:|:..|.|:|||:
 Frog   196 KDRQIVIDCESERLNAILTQVVVKLEKNIIG----YH-YILANLGFMDIDMQKFKEAGANVTGFQ 255

  Fly   268 LIN--EKIVSDVVRQWS---------IDEKGLLRSANLTTVRSETALMYDAVHLFAKALHDLDTS 321
            |:|  :.:||.:::||.         :|.|         ..:..:||.||.|.:.|:|...| ..
 Frog   256 LVNYTDTMVSRIMQQWKNYDGREQPRVDWK---------KPKYTSALTYDGVRVMAEAFQSL-RK 310

  Fly   322 QQIDIHPISCDGQS------TWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPA 380
            |:|||......|..      .|..|..:...::.|.::||:..::|:.:|.||::.|.::||...
 Frog   311 QRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRLEGLSGNVQFNEKGRRTNYTLHVLELKHE 375

  Fly   381 GIRKIGTWNSTLPDGINFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIPLSGNDQFE 445
            |||.|..||.  .|.:....|.:|...: ...::|:|.:|||||..||.|.|::|..|.|||:||
 Frog   376 GIRHIAHWNE--DDKLIPLATDAQAGND-TIGVQNRTYIVTTILEAPYVMLKKNADQLEGNDRFE 437

  Fly   446 GYAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQ 510
            ||.|:|..||:|.:||.||:::|.||.||:.:.....||||:.||:..|||||:|.||||..||:
 Frog   438 GYCVELAAEIAKHVGFKYKLEIVKDGKYGARDSDMKAWNGMVGELVYGRADLAVAPLTITLVREE 502

  Fly   511 AVDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWP 575
            .:||:.|||:||:||:.:||.|..|.:||||.||:.::|:.:..||:||||:||::::|:||||
 Frog   503 VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEW- 566

  Fly   576 AYTDAHGEKVE-----------SQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLI 629
                 |.|:.|           ::|.:.|.:||::|:.||||||..|::||.|:|.|:|||||||
 Frog   567 -----HNEEFEEGKEQPTTDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLI 626

  Fly   630 MISSYTANLAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMES 694
            :|||||||||||||||||.||||||:||||||.|.||.|..|||..||:.|||:.:::||::|.|
 Frog   627 IISSYTANLAAFLTVERMVSPIESADDLAKQTEIAYGTLDSGSTKEFFKRSKIAVFEKMWTYMRS 691

  Fly   695 ARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERN-CELTQVGGMLDTKSYGIATPPNSP 758
            |.||||..:..||:.||.|.||.||:|:|||..||:.:|. |:..:|||.||:|.||||||..||
 Frog   692 AEPSVFVKTTEEGMNRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSP 756

  Fly   759 YRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGM 823
            .|.|:|..:|||.|:|.|..||:|||.:|   |:|..:.|.|....:.|.|:||.|||.:|:||:
 Frog   757 LRGAVNLAVLKLSEQGVLDKLKSKWWYDK---GECGSKDSGSKDKTSALSLSNVAGVFYILIGGL 818

  Fly   824 GVACVIAVCEFVWKSR 839
            |:|.::|:.||.:|||
 Frog   819 GLAMLVALIEFCYKSR 834

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
KaiR1D	NP_650925.1	PBP1_iGluR_Kainate	31..397	CDD:107377	107/399 (27%)
		ANF_receptor	42..378	CDD:279440	94/369 (25%)
		Periplasmic_Binding_Protein_Type_2	415..785	CDD:304360	206/381 (54%)
		Lig_chan	547..823	CDD:278489	150/287 (52%)
gria1	XP_004912781.1	PBP1_iGluR_AMPA_GluR1	26..393	CDD:380613	107/402 (27%)
		PBP2_iGluR_AMPA_GluR1	407..788	CDD:270447	209/389 (54%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000021
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.000