DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and GLR2.5

DIOPT Version :10

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_001332219.1 Gene:GLR2.5 / 830991 AraportID:AT5G11210 Length:918 Species:Arabidopsis thaliana


Alignment Length:968 Identity:185/968 - (19%)
Similarity:314/968 - (32%) Gaps:362/968 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SACLLLLAGLQLSILVPTEANDFSSFLSANASL---------AVVVDHEYMTVHGENILAHFEKI 64
            ||...||..|:....:....:|.|...:.:|.:         .:.||:|:    ||.||.:    
plant   132 SATSPLLDSLRSPYFIRATHDDSSQVQAISAIIESFRWREVVPIYVDNEF----GEGILPN---- 188

  Fly    65 LSDVIRENLRNGGINVKYFSWNAVRLKKDFLAAITVTDCENTWNFYK-NTQETSILLIAITDSDC 128
            |.|..:|      |||:....:|:.|.        .:|.:.....|| .|..|.:.::.      
plant   189 LVDAFQE------INVRIRYRSAISLH--------YSDDQIKKELYKLMTMPTRVFIVH------ 233

  Fly   129 PRLPLNRALMVPIVENGDEFPQLILDAKVQQILNWKTAVVFVDQTILEENALLVKSIVHESITNH 193
                     |:|     |...:|.                    :|.:|..:|.|..|. .:||.
plant   234 ---------MLP-----DLGSRLF--------------------SIAKEIDMLSKGYVW-IVTNG 263

  Fly   194 ITPISLILYEINDSLRGQQKRVALRQAL---SQFAPKK---HEEMRQQFLVISAFHEDIIEIAET 252
            |..:.        |:.|:...|.:...|   :.||..|   |.|.|.|    ..|.      .|.
plant   264 IADLM--------SIMGESSLVNMHGVLGVKTYFAKSKELLHLEARWQ----KRFG------GEE 310

  Fly   253 LNMFHVGNQWMIFVLDMVARDFDAGT-VTINLDEGANIAFALNET-DPNCQDSLNCTISEISLA- 314
            ||.|..   |.          :||.| :.::::|..::..:.|.| :...:|.:...:.|:.:| 
plant   311 LNNFAC---WA----------YDAATALAMSVEEIRHVNMSFNTTKEDTSRDDIGTDLDELGVAL 362

  Fly   315 ----LVNAISKITVEEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVE 375
                |::|:|  ||..:.:.|          ||                                
plant   363 SGPKLLDALS--TVSFKGVAG----------RF-------------------------------- 383

  Fly   376 TAITWGKSQENRKFRSTPQRDAKNRNFEFINI--------GYWTPVLGFVCQELAFPHIEHHFRN 432
                   ..:|.|..:|        .|:.|||        |:|...:|.| :.|....:.|..|.
plant   384 -------QLKNGKLEAT--------TFKIINIEESGERTVGFWKSKVGLV-KSLRVDKVSHSSRR 432

  Fly   433 ITMDIL---TVHNPP-WQI----------------------LTKNSNGVIVEHKGIVME----IV 467
            :...|.   |:..|. |:.                      :||:.|..:....|..::    ::
plant   433 LRPIIWPGDTIFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDENTNVPTVTGFCIDVFNTVM 497

  Fly   468 KELSRALNFSYYLHEASAWKEE---DSLSTSAGGNESDELVGSMT----------FRIPYRVVEM 519
            .::..|:::.|...:....|..   |.:..:....|.|..||..|          |.:||....:
plant   498 SQMPYAVSYEYIPFDTPDGKPRGSYDEMVYNVFLGEFDGAVGDTTILANRSHYVDFALPYSETGI 562

  Fly   520 VQGNQFFIAAVAATVEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETW------ 578
            |    |.:     .|:|..:|                        ..::|..|.|.|.|      
plant   563 V----FLV-----PVKDGKEK------------------------GEWVFLKPLTKELWLVTAAS 594

  Fly   579 FCLMGIILLTAPTLYAINRLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYLPTADS--GRLVV 641
            |..:||::    .::........:|..|:  ..:.|.|::.|..|.   ..:...::|  .|::|
plant   595 FLYIGIMV----WIFEYQADEEFREQMII--DKISSVFYFSFSTLF---FAHRRPSESFFTRVLV 650

  Fly   642 GFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYGLRNGTF-FERYVQSTTRE 705
            ..|..|:::|..:|...|.:.||..:.:|.|.:::.|  .|..|..|.:.|:| |||..|....|
plant   651 VVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDL--RKSGVNIGYQTGSFTFERLKQMRFDE 713

  Fly   706 DFKHYLERAKIYGSAQE------------------EDIEAVK----------------------- 729
                  .|.|.|.|.:|                  :::..:|                       
plant   714 ------SRLKTYNSPEEMRELFLHKSSNGGIDAAFDEVAYIKLFMAKYCSEYSIIEPTFKADGFG 772

  Fly   730 -------------RGERINIDWRINLQLIVQRHFEREKEC--------HFALGRESFVDEQIAMI 773
                         ..:.:||.....::.|..:.|..||.|        ...|...||  |.:.:|
plant   773 FAFPLGSPLVSDISRQILNITEGDAMKAIENKWFLGEKHCLDSTTSDSPIQLDHHSF--EALFLI 835

  Fly   774 VPAQSAYLHLVNRHIKSMFRMGFIERWHQM--NLPSAGKCNGKSAQRQVTNHKVNMDD 829
            |...|..|.|:     .:...|:.||.|..  |||:.   ...:||.:| |.:.|:.|
plant   836 VFVVSVILLLL-----MLASRGYQERQHNASPNLPND---QANAAQEEV-NEEGNVGD 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:473866 59/319 (18%)
Lig_chan 574..836 CDD:459656 70/329 (21%)
GLR2.5NP_001332219.1 PBP1_GABAb_receptor_plant 38..421 CDD:380645 85/442 (19%)
GluR_Plant 456..806 CDD:270404 67/399 (17%)
Lig_chan 584..838 CDD:459656 54/272 (20%)

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