DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and GLUR2

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_001320141.1 Gene:GLUR2 / 829682 AraportID:AT4G35290 Length:912 Species:Arabidopsis thaliana


Alignment Length:872 Identity:151/872 - (17%)
Similarity:282/872 - (32%) Gaps:280/872 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 ETSILLIAITDSDCPRLPLNRALMVPIVENGDEFPQLILDAKVQQI--LNWKTAVVFVDQTILEE 177
            |.|:.:::.|..|    |...||..|...........::.|..:.|  ..|...:...:.   ::
plant   116 ELSVPMLSFTALD----PSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYND---DD 173

  Fly   178 NALLVKSIVHESITNHITPISLILYEINDSLRGQQKRVALRQALSQ----FAPK-------KHEE 231
            |:           .|.||       .:.|.|.|::.:::.:..|..    .:|:       |.:.
plant   174 NS-----------RNGIT-------ALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQG 220

  Fly   232 MRQQFLVISAF---HEDIIEIAETLNMFHVG-----NQWMIFVLDMV------------------ 270
            |..:.::::.|   .:.|.|.|:.|.|...|     ..|:..:||.|                  
plant   221 MESRVIIVNTFPKTGKKIFEEAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLR 285

  Fly   271 --------ARDFDA-------GTVTIN--------------------LDEGANIAFALNETDPNC 300
                    .:||.|       |||.:|                    ||..|||:|:   :||  
plant   286 IHTPNSKKKKDFVARWNKLSNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFS---SDP-- 345

  Fly   301 QDSLNCTISEISLALVNAISKITVEEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAK 365
                       .|..:.....:.:...||:                ::.::.|:|:   :.||. 
plant   346 -----------KLTSMKGGGSLNLGALSIF----------------DQGSQFLDYI---VNTNM- 379

  Fly   366 CSSCARWRVETAITWGKSQENRKFRSTPQRDAKNRNFEFIN--------IGYWT--PVLGFVCQE 420
                      |.:| |:.|      ..|.|.....:::.||        ||||:  ..|..:..|
plant   380 ----------TGVT-GQIQ------FLPDRSMIQPSYDIINVVDDGFRQIGYWSNHSGLSIIPPE 427

  Fly   421 LAFPHIEH------HFRNITMDILTVHNPPWQILTKNSN--GVIVEHKGIVMEIVKEL---SRAL 474
            ..:..:.:      |..|:|....|...|...:...|..  .:.|..:....|.|..|   ::..
plant   428 SLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFKEFVSRLDGSNKVQ 492

  Fly   475 NFSYYLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQG------NQFF----IAA 529
            .::..:.||:                    |..:::.:|:..|....|      |:|.    |..
plant   493 GYAIDVFEAA--------------------VKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGV 537

  Fly   530 VAATVED-----PDQKPFNYTQP------ISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCLMG 583
            ..|.|.|     ...:..::|||      :.|...:.:...|      :.|..|||...|.....
plant   538 FDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTKLNDTP------WAFLRPFTPPMWAVTAA 596

  Fly   584 IILLTAPTLYAIN-------RLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYLPTADS----- 636
            ..|:....::.:.       |..|.|:        :.:..|:.|..      |:....::     
plant   597 FFLIVGSVIWILEHRINDEFRGPPRKQ--------IVTILWFSFST------MFFSHRENTVSTL 647

  Fly   637 GRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQP---GVDYLNQLEDHKDIVQYGLRNGTFFERY 698
            ||.|:..|..||:::.::|..:|.:.||..:...   |||.|.....     :.|.:.|::.|.|
plant   648 GRAVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIRGVDTLISSSG-----RVGFQVGSYAENY 707

  Fly   699 VQSTTREDFKHYLERAKI--------YGSAQEEDIEAVKRGERINIDWRINLQLIVQRHFEREKE 755
            :.....      :.|:::        |.:|.:....|....||..:|..::            :.
plant   708 MIDELN------IARSRLVPLGSPKEYAAALQNGTVAAIVDERPYVDLFLS------------EF 754

  Fly   756 CHFALGRESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQV 820
            |.||:..:.|.........|..|.....::..|..:...|.:::.|...|..:...|...:....
plant   755 CGFAIRGQEFTRSGWGFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDE 819

  Fly   821 TNHKVNMDDMQGCFLVLLLGFTLALLI 847
            .:.::.:....|.|||..:...:||.|
plant   820 DSEQLKLRSFWGLFLVCGISCFIALFI 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 55/308 (18%)
Lig_chan 576..836 CDD:306551 46/282 (16%)
GLUR2NP_001320141.1 PBP1_GABAb_receptor_plant 31..422 CDD:380645 67/383 (17%)
GluR_Plant 466..804 CDD:270404 67/400 (17%)
Lig_chan 590..840 CDD:395014 48/286 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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