DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and GLR2.7

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_180476.3 Gene:GLR2.7 / 817460 AraportID:AT2G29120 Length:952 Species:Arabidopsis thaliana


Alignment Length:918 Identity:177/918 - (19%)
Similarity:327/918 - (35%) Gaps:277/918 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SACLLLLAGLQLSILVPTEANDFSSFLSANASL----------AVVVDHEYMTVHGENILAHFEK 63
            ||...||..:.....|....:| ||.:.|.|::          |:.||:|:    ||.||    .
plant   134 SATCPLLTSINSPYFVRATLDD-SSQVKAIAAIVKSFGWRNVVAIYVDNEF----GEGIL----P 189

  Fly    64 ILSDVIRENLRNGGINVKYFSWNAVRLKKDFLAAITVTDCENTWNFYK-NTQETSILLIAITDSD 127
            :|:|.:::        |:.|..|...:.::      ..|.:.....|| .|.:|.:.::.:.   
plant   190 LLTDALQD--------VQAFVVNRCLIPQE------ANDDQILKELYKLMTMQTRVFVVHMP--- 237

  Fly   128 CPRLP---LNRALMVPIVENGDEFPQLILDAKVQQILNWKTAVVFVDQTILEENALLVKSIVHES 189
             |.|.   ..:|..:.::|.|  :..|:.|.    ::|           :|:.|           
plant   238 -PTLGFRFFQKAREIGMMEEG--YVWLLTDG----VMN-----------LLKSN----------- 273

  Fly   190 ITNHITPISLILYEINDSLRGQQKRVALRQALSQFAPKKHEEMRQQFLVISAFHEDIIEIAETLN 254
                         |...||...|..:.:|..:.:....|:..:|.:.:.....::      |.:|
plant   274 -------------ERGSSLENMQGVLGVRSHIPKSKKLKNFRLRWEKMFPKKGND------EEMN 319

  Fly   255 MFHVGNQWMIFVLDMVARDFDAGTVTINLDEGANIAFALNETDP----NCQDSLNCT-ISEISLA 314
            :|             ..|.:|:.|......|..||. :|....|    |.:.:|... :|....:
plant   320 IF-------------ALRAYDSITALAMAVEKTNIK-SLRYDHPIASGNNKTNLGTLGVSRYGPS 370

  Fly   315 LVNAISKITV-----EEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRV 374
            |:.|:|.:..     |.|.|.|::....::.|.....|::.                  ...||.
plant   371 LLKALSNVRFNGLAGEFELINGQLESSVFDVINIIGSEERI------------------IGLWRP 417

  Fly   375 ETAITWGKSQENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHIEHHFRNITMDILT 439
            ...|.                :||::|        .|.|||.....:.:|       ..:.|:  
plant   418 SNGIV----------------NAKSKN--------TTSVLGERLGPVIWP-------GKSKDV-- 449

  Fly   440 VHNPP-WQILTKNSNGVIVE-----HKGIVMEI---VKELSRALNFSYYLHEASAWKEEDSLSTS 495
               |. |||.|   ||.::.     .||.:..:   :..:|.|:..:.|                
plant   450 ---PKGWQIPT---NGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGY---------------- 492

  Fly   496 AGGNESDELVGSMTFRIPYRVV--------------EMVQGNQFFIAAVAATVED----PDQKPF 542
                 ..|:..::..::||.|:              |||.  |.:..|..|.|.|    .::..:
plant   493 -----CIEIFEAVLKKLPYSVIPKYIAFLSPDENYDEMVY--QVYTGAYDAVVGDVTIVANRSLY 550

  Fly   543 -NYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAPLKEMRI 606
             ::|.|.:....|.:....|. ...::|..|::::.|       :.||.....|..:..:.|.|:
plant   551 VDFTLPYTESGVSMMVPLKDN-KNTWVFLRPWSLDLW-------VTTACFFVFIGFIVWILEHRV 607

  Fly   607 -----------VGLSTVKSCFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLV 660
                       :|.|     ||:.| :.:.........::..|.||..|..||:||:.:|..||.
plant   608 NTDFRGPPHHQIGTS-----FWFAF-STMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTANLT 666

  Fly   661 AFLTFPKFQPGVDYLNQLEDHKDIVQY----GLRNGTFFERYVQSTTREDFKHYLERAKIYGSAQ 721
            :|.|....||.|      .:.||::::    |.:.|||....::|...::     .:.|.:|||.
plant   667 SFFTVKLLQPTV------TNWKDLIKFNKNIGYQRGTFVRELLKSQGFDE-----SQLKPFGSAV 720

  Fly   722 EEDIEAVKRGE-RINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLVN 785
            |.| |....|. ..:.|....:::|:.::..:     :.:...||.......:.|.:|.....|:
plant   721 ECD-ELFSNGTITASFDEVAYIKVILSQNSSK-----YTMVEPSFKTAGFGFVFPKKSPLTDDVS 779

  Fly   786 RHIKSMFR---MGFIE-RWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLALL 846
            |.|.::.:   |..|| :|.:.  |:    |.......::::.:::....|.||:..:...||||
plant   780 RAILNVTQGEEMQHIENKWFKK--PN----NCPDLNTSLSSNHLSLSSFWGLFLIAGIASFLALL 838

  Fly   847 IVCGEFWY 854
            |....|.|
plant   839 IFVANFLY 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 64/310 (21%)
Lig_chan 576..836 CDD:306551 59/279 (21%)
GLR2.7NP_180476.3 PBP1_GABAb_receptor 40..421 CDD:107361 70/392 (18%)
ANF_receptor 54..405 CDD:279440 67/358 (19%)
GluR_Plant 460..799 CDD:270404 77/392 (20%)
Lig_chan 584..832 CDD:278489 60/283 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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