DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and GLR2.2

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_180048.1 Gene:GLR2.2 / 817008 AraportID:AT2G24720 Length:920 Species:Arabidopsis thaliana


Alignment Length:791 Identity:140/791 - (17%)
Similarity:245/791 - (30%) Gaps:287/791 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 KKDFLAAITVTDCENTWNFYKNTQETSIL----------LIAITDSDCPRLPLNRALMVPIVENG 145
            |.|.:.|.|.     ..:..||.|..:||          ||.|          .:...||:|...
plant    78 KNDVVGAATA-----AIDLIKNKQVKAILGPWTSMQAHFLIEI----------GQKSRVPVVSYS 127

  Fly   146 DEFPQLIL------------DAK-------VQQILNWKTAV-VFVDQTILEENALLVKSIVHESI 190
            ...|.|..            |:.       :.::..|:..| |::|.|..|.             
plant   128 ATSPSLTSLRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVPVYIDNTFGEG------------- 179

  Fly   191 TNHITPISLILYEINDSLRGQQKRVALRQALSQFAPK--------KHEEMRQQFLVI---SAFHE 244
                     |:..:.|||:....|:..|..:...|..        |...|..:..::   |:...
plant   180 ---------IMPRLTDSLQDINVRIPYRSVIPLNATDQDISVELLKMMNMPTRVFIVHMSSSLAS 235

  Fly   245 DIIEIAETLNMFHVGNQWMIF--VLDMV-----------------------ARD----------- 273
            .:...|:.|.:...|..|::.  |:|.:                       ::|           
plant   236 TVFIKAKELGLMKPGYVWILTNGVMDGLRSINETGIEAMEGVLGIKTYIPKSKDLETFRSRWKRR 300

  Fly   274 -------------FDAGTVTINLDEGA---NIAFALNETDPNCQDSLNCTISEISLALVNAISKI 322
                         :||.|......|.|   |:.|:..:|..|..:.....:|:....|:..:|  
plant   301 FPQMELNVYGLWAYDATTALAMAIEDAGINNMTFSNVDTGKNVSELDGLGLSQFGPKLLQTVS-- 363

  Fly   323 TVEEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITWGKSQENR 387
            ||:.:.:.|:        ..|...:.|..:.|.:...                            
plant   364 TVQFKGLAGD--------FHFVSGQLQPSVFEIVNMI---------------------------- 392

  Fly   388 KFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHI-------EHHFRNITMDILTVHNPP- 444
               .|.:|          :||:||...|.|.:....|..       ..|.::|......|..|. 
plant   393 ---GTGER----------SIGFWTEGNGLVKKLDQEPRSIGTLSTWPDHLKHIIWPGEAVSVPKG 444

  Fly   445 WQILTKN------------------------SNGVIVEHKGIVMEIVKELSRAL----NFSYYLH 481
            |:|.|..                        :|..:|  ||..::..:.:.:|:    ::.::..
plant   445 WEIPTNGKKLRIGVPKRIGFTDLVKVTRDPITNSTVV--KGFCIDFFEAVIQAMPYDVSYEFFPF 507

  Fly   482 EASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPF-NYT 545
            |..        :....||.:|             :|..|...| |.|.|..|....::..| ::|
plant   508 EKP--------NGEPAGNHND-------------LVHQVYLGQ-FDAVVGDTTILANRSSFVDFT 550

  Fly   546 QPISVQKYSFITRKPDEVSR-IYLFTAPFTVETW------FCLMGIILLTAPTLYAINRLAPLKE 603
            .|........|....|||.| .:.|..|.::|.|      |.|:||.:.|..  :.:|     .:
plant   551 LPFMKSGVGLIVPLKDEVKRDKFSFLKPLSIELWLTTLVFFFLVGISVWTLE--HRVN-----SD 608

  Fly   604 MRIVGLSTVKSCFWYIFGALLQQGGMYLP----TADSGRLVVGFWWIVVIVLVTTYCGNLVAFLT 664
            .|........:.||:.|..:     ::.|    .:...|.:|..|:.|::||..:|..:|.:.||
plant   609 FRGPANYQASTIFWFAFSTM-----VFAPRERVLSFGARSLVVTWYFVLLVLTQSYTASLASLLT 668

  Fly   665 FPKFQPGVDYLNQLEDHKDIVQY-------GLRNGTFFERYVQSTTREDFKHYLERAKIYGSAQE 722
            ..:..|.:..::.|....:.|.|       |..|.|.|.   ||:...           :.:|:|
plant   669 SQQLNPTITSMSSLLHRGETVGYQRTSFILGKLNETGFP---QSSLVP-----------FDTAEE 719

  Fly   723 EDIEAVKRGER 733
            .| |.:|:|.:
plant   720 CD-ELLKKGPK 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 64/315 (20%)
Lig_chan 576..836 CDD:306551 39/175 (22%)
GLR2.2NP_180048.1 PBP1_GABAb_receptor 33..412 CDD:107361 67/421 (16%)
ANF_receptor 47..392 CDD:279440 59/360 (16%)
HisJ 438..>587 CDD:223904 33/172 (19%)
GluR_Plant 452..801 CDD:270404 65/329 (20%)
Lig_chan 582..819 CDD:278489 39/175 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.