DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and gria1a

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:958 Identity:176/958 - (18%)
Similarity:353/958 - (36%) Gaps:222/958 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 AGLQLSILVPTEANDFSSF---LSANASLAVVVDHEYMTVHGEN------ILAHFEKILSDVIRE 71
            :.:.:..|.|||::::..|   ||.:..:..:|....|...|.:      ..:.|.|.:..:|  
Zfish    23 SNINIGGLFPTESHEYEVFRFALSHHQDIPKLVPQVDMVKLGNSFSMTYAFCSQFSKGVYAII-- 85

  Fly    72 NLRNGGINVKYFSWNAVRLKKDFLAAITVTDCENTWNF-YKNTQETSILLIAITDSDCPRLPLNR 135
                 |:    :....|.:...|..|:.|  |..|.:| .:|:.:..|.|         |..|..
Zfish    86 -----GV----YDRKTVNMLMSFCGALHV--CFVTPSFPMENSNQFVIQL---------RPELQD 130

  Fly   136 ALMVPIVE--------------NGDEFPQLILDAKVQQILNWKTAVVFVDQTILEENALLVKSIV 186
            || |.::|              :|....|.:||...:.  ||                 ||.|:.
Zfish   131 AL-VGVIEHYRWSKFVYMYSSDSGLSVLQKVLDTAAEH--NW-----------------LVTSVN 175

  Fly   187 HESITNHITPISLILYEINDSLRGQQKRVALRQALSQFAPKKHEEMRQQFLVISAFHEDIIEIAE 251
            .|::|.     :..|....|..:.::.::.:...|.:               :::..:.|||:.:
Zfish   176 VETMTE-----ASFLKVFQDLDKKKEGQIIIDCELER---------------LTSILKKIIELGK 220

  Fly   252 TLNMFH--VGNQWMIFVLDMVARDFDAGTVTINLDEGANIAFAL-NETDPNCQDSLNCTISEISL 313
            .:..:|  :.|   :..||:...:|..|...:.       .|.| |..|||    ::.|:.: .:
Zfish   221 NVKSYHYILAN---LGFLDIDLTEFKKGEANVT-------GFQLVNYADPN----VSRTVQQ-WM 270

  Fly   314 ALVNAISKITVEEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARW------ 372
            ...|..:|:........|.::.:..:.:....|..:.:.::..:.........:..|.|      
Zfish   271 EFDNKDAKVPKRRLKYTGALTYDGVKVMSTAFQNLRRQRIDISRRGNAGECLANPPAPWGQGIDI 335

  Fly   373 -------RVETAITWGKSQENRKFRSTPQRDAKNRNFEFI--------NIGYWTPVLGFVCQELA 422
                   |:| .:| |..|.|.|.|.|      |.:...:        .:|||.....||.....
Zfish   336 QRALQQVRIE-GLT-GHIQFNEKGRRT------NYSISVMELRPTGPKKVGYWNEDEKFVSTAAY 392

  Fly   423 FP--HIEHHFRNITMDILTVHNPPWQILTKNSNGVIVEH-------KGIVMEIVKELSRALNFSY 478
            .|  :..:..:|.|..:.|:...|:.:|.||.     ||       :|..:|:..|:::.:.:.|
Zfish   393 MPGSNETYGLQNRTYIVTTILESPYVMLKKNH-----EHFTGNDKYEGYCVELAAEIAKHVGYHY 452

  Fly   479 YLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPFN 543
            .|...:..|        .|..:::.::.:      ..|.|:|.| :..:|....|:....::..:
Zfish   453 ILKIVADGK--------YGARDAETMMWN------GMVGELVYG-KADVAVAPLTITLVREEVID 502

  Fly   544 YTQPISVQKYSFITRKPDEVS-RIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAPL------ 601
            :::|......|.:.:||.:.. .::.|..|...|.|.|::...:..:..|:.::|.:|.      
Zfish   503 FSKPFMSLGISIMIKKPTKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHADD 567

  Fly   602 -------------------------------KEMRIVGLSTVKSCFWYIFGALLQQGGMYLPTAD 635
                                           ::....|   :.:..|:..||.:|||....|.:.
Zfish   568 CEDGAEENPNQPSSSSAQPGQNQQNQNQQSQEQTNEFG---IFNSLWFSLGAFMQQGCDISPRSL 629

  Fly   636 SGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYGLRNGT---FFER 697
            |||:|.|.||...::::::|..||.||||..:....::....|....:|....|..|:   ||.|
Zfish   630 SGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKEFFRR 694

  Fly   698 YVQSTTREDFKHYLERA--KIYGSAQEEDIEAVKRGERINIDWRINLQLIVQRHFEREKECHFAL 760
             .:....|....|::.|  .::....:|.:..|::.:.   .:...|:..:..:.|:.|.|....
Zfish   695 -SKIAVFEKMWSYMKSADPSVFVKTTDEGVMRVRKSKG---KYAYLLESTMNEYIEQRKPCDTMK 755

  Fly   761 GRESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIER-----WHQMNLPSAGKCNGKSAQRQV 820
            ...:...:...:..|..|...:.||..:..:...|.:::     |:     ..|:|.......:.
Zfish   756 VGGNLDSKGYGIATPKGSPLRNPVNLAVLKLNEQGLLDKLKNKWWY-----DKGECGSGGGDSKD 815

  Fly   821 TNHKVNMDDMQGCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQFTN 868
            ....:::.::.|.|.:|:.|..||:|:...||.|:....||:.:|..|
Zfish   816 KTSALSLSNVAGVFYILIGGLGLAMLVALVEFCYKSRTESRRMKQSIN 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 62/315 (20%)
Lig_chan 576..836 CDD:306551 54/306 (18%)
gria1aNP_991161.1 Periplasmic_Binding_Protein_Type_1 26..387 CDD:299141 79/445 (18%)
ANF_receptor 36..369 CDD:279440 72/417 (17%)
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447 79/433 (18%)
Lig_chan 536..836 CDD:278489 55/311 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591357
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

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