DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and grin3a

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:470 Identity:86/470 - (18%)
Similarity:170/470 - (36%) Gaps:76/470 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   426 IEHHF--------------RNITMDILTVHNPPWQILTKNSNG----VIVEHK----GIVMEIVK 468
            :||.|              ..:.:|.||......:.|.:...|    |.:|.|    |..:::::
Zfish   527 VEHPFVFTRDVDDEGLCPAGQLCLDPLTNDTALLESLFQGLQGANDTVPLEFKKCCYGYCIDLLE 591

  Fly   469 ELSRALNFSYYLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVAAT 533
            :|:..:.|.:.|:.....|        .|..::....|         :|..:......:|..:.:
Zfish   592 KLAEDMGFDFDLYIVGDGK--------YGAYKNGRWTG---------LVGDLMSGAAHLAVTSFS 639

  Fly   534 VEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCLMGIILLTAPTLYAINRL 598
            :.....:..::|.|........:.|..|..:.|..|..|.....|..:...:.:||..|......
Zfish   640 INSARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWSMWLGIFVSLHVTAVFLTLYEWK 704

  Fly   599 APL-------KEMRIVGLST-VKSCFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTY 655
            :|.       ...|:...|: :..|:..:||   :...:..|...:||.::..|.|..:..::||
Zfish   705 SPFGMTPRGRNRDRVFSFSSALNVCYAILFG---RTAAIKPPKCWTGRFLMNLWAIFCLFCLSTY 766

  Fly   656 CGNLVAFLTFPKFQPGVDYLNQLEDHK-DIVQYGLRNGTFFERYVQSTTREDFKHYLERAKIYGS 719
            ..||.|.:...|   ..:.|:.:.|.| .....|.|.||..|...:...::.|....|..:.|.:
Zfish   767 TANLAAVMVGEK---TYEQLSGIHDPKLHHPSQGFRFGTVRESSAEDYVKKSFPEMHEYMRRYNA 828

  Fly   720 AQEED-IEAVKRGERINIDWRINLQLIVQRHFEREKE------CHFALGRESFVDEQIAMIVPAQ 777
            ....| |:.:|...: .:|..|..:.::......:|.      ..:.:|        :....|..
Zfish   829 PTTPDGIDHLKDDPQ-KLDAFIMDKALLDYWAHADKXYISLLLTGYGIG--------LKQNSPLT 884

  Fly   778 SAYLHLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFT 842
            |....||:::....|.....::|::: :|    | ||.:.......::.:....|.|::|.:|..
Zfish   885 SNISELVSQYKSDGFMDMLHDKWYKV-VP----C-GKRSFAVTETLQMGIKHFSGLFVMLCVGVA 943

  Fly   843 LALLIVCGEFWYRRF 857
            |:||...||....|:
Zfish   944 LSLLTTLGEHIVHRW 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 53/298 (18%)
Lig_chan 576..836 CDD:306551 51/275 (19%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141
ANF_receptor 132..452 CDD:279440
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 71/412 (17%)
Lig_chan 682..941 CDD:278489 52/279 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591379
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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