DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and grin2aa

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:XP_021329529.1 Gene:grin2aa / 563297 ZFINID:ZDB-GENE-070424-129 Length:1460 Species:Danio rerio


Alignment Length:799 Identity:146/799 - (18%)
Similarity:302/799 - (37%) Gaps:188/799 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 TAVVFVDQTI----------LEENALLVKSIVHE------SITNHITP-----ISLILYEINDSL 208
            ::::..|:.:          :::.|||:.:|:.|      ||.....|     |:::...:::|.
Zfish   128 SSMIMADKDVKSTFFQFGASIQQEALLMLNIMEEYDWHVFSIVTSKFPGYQDFIAILKTTVDNSF 192

  Fly   209 RG--QQKRVAL----RQALSQFAPKKHEEMRQQFLVISAFHED----IIEIAETLNMFHVGNQWM 263
            .|  .|..:.|    ..:.:|...||    .|..:|:....:|    |:|.|.:|.:...|..|:
Zfish   193 VGWDLQHIITLDAVDGDSRTQIQLKK----VQSPVVLLYCSKDEAAYILEEARSLGLTGFGYIWI 253

  Fly   264 IFVL-----DMVARDFDAGTVTINLDEGANIAFALNETDPNCQDSLNCTISEISLALVNAISKIT 323
            :..|     ::....|.:|.::::.|:.   .:.|   :...:|.|. .|:..:.|::.....|.
Zfish   254 VPSLTTGNPEITPDTFPSGMISVSYDDW---DYPL---EARVRDGLG-IITTAAAAMLEEFGDIP 311

  Fly   324 VEEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITW-GK----S 383
            ..:.|.||::.                          ||....|:..::.:.  :|| ||    :
Zfish   312 EAKTSCYGQME--------------------------KTKLPPSALHKYMMN--VTWDGKDLSFT 348

  Fly   384 QENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQEL-----------AFPHIEHHFRNITMDI 437
            ::..:..........|::.|:..:|.|..      |.|           :|...|....::|  |
Zfish   349 EDGYQVHPKLVVIVLNKDREWEKMGKWEN------QSLTLKYPVWPRFNSFGDAETDDNHLT--I 405

  Fly   438 LTVHNPPWQIL------------------------TKNSNGVIVEH--KGIVMEIVKELSRALNF 476
            :|:...|:.|:                        |....|..::.  ||..::|:|:::|.:.|
Zfish   406 VTLEEKPFVIVENVERLTGTCMRNSVPCRKHIKDNTTEGGGTYIKKCCKGFCIDILKKIARNVKF 470

  Fly   477 SYYLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVAA-TVEDPDQK 540
            :|.|:..:..|....::....|     :||.:.             |:..:.||.: |:.:...:
Zfish   471 TYDLYLVTNGKHGKKINNVWNG-----MVGEVV-------------NKKAVMAVGSLTINEERSE 517

  Fly   541 PFNYTQP-----ISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCLMGIILL-TAPTLYAINRLA 599
            ..:::.|     |||    .::|....||. ..|..||:...|..:..::|| ||..::....::
Zfish   518 VIDFSVPFVETGISV----MVSRSNGTVSP-SAFLEPFSASVWVMMFVMLLLVTAMAVFMFEYIS 577

  Fly   600 PLKEMRIVGLS--------TVKSCFWYIFGALLQQG-GMYLPTADSGRLVVGFWWIVVIVLVTTY 655
            ||...|.:...        |:....|.::|.:.... .:..|...:.:.:|..|....::.:.:|
Zfish   578 PLGFNRNLAQGKDPHGPSFTMGKAVWLLWGLVFNNSVPVQNPKGTTSKFIVSVWAFFAVIFLASY 642

  Fly   656 CGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYG----LRNGTFFERYVQSTTRE---DFKHYLER 713
            ..||.||:...:|   ||.:..|.|.|....|.    .|.||......:...|:   |...|:  
Zfish   643 TANLAAFMIQEEF---VDQVTGLSDKKFQSPYSYSPPFRFGTVPNGSTERNIRKNYPDMHQYM-- 702

  Fly   714 AKIYGSAQEEDIEAVKRGERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQ- 777
            .|.:.:...:.:.::|.|:   :|..|....::.....|::.|........::.......:..| 
Zfish   703 VKYHQTGVNDALVSLKTGK---LDAFIYDAAVLNYMAGRDEGCKLVTIGSGYIFATTGYGIALQK 764

  Fly   778 -SAYLHLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGF 841
             |.:...|:..|.::...|.:|......|  .|.|:.:  :.:|.:.::::|:|.|.|.:|....
Zfish   765 GSLWKRPVDLAILAIIGDGEMEELEAQWL--TGICHNE--KNEVMSSQLDVDNMAGVFYMLATAM 825

  Fly   842 TLALLIVCGE---FWYRRF 857
            .|:|:....|   :|..|:
Zfish   826 GLSLITFVWEHLFYWRLRY 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 62/313 (20%)
Lig_chan 576..836 CDD:306551 53/278 (19%)
grin2aaXP_021329529.1 PBP1_iGluR_NMDA_NR2 33..389 CDD:107373 52/305 (17%)
PBP2_iGluR_NMDA_Nr2 400..799 CDD:270436 81/433 (19%)
NMDAR2_C 836..1460 CDD:313729 2/9 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591353
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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