DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and Nmdar1

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:929 Identity:173/929 - (18%)
Similarity:335/929 - (36%) Gaps:257/929 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LSANASLAVVVDHEY----MTVHGENILAHFEKILSDVIRENLRNGGINVKYFSWNAVRLKKDFL 95
            |..|...||||.||.    ::....:..:.|..|  .||..:.|:...:.|....:.:|....:.
  Fly    96 LIENRVYAVVVSHEQTSGDLSPAAVSYTSGFYSI--PVIGISSRDAAFSDKNIHVSFLRTVPPYY 158

  Fly    96 AAITVTDCENTW-NFYKNTQETSILLIAITDSDCPRLPLNRALMVPIVENGDE-FPQLILDAKVQ 158
            ....|      | ....:...|.:::|..:|:|      .||::......... :..:.:.|.|:
  Fly   159 HQADV------WLEMLSHFAYTKVIIIHSSDTD------GRAILGRFQTTSQTYYDDVDVRATVE 211

  Fly   159 QILNWKTAVVFVDQTILEENALLVKSIVHESITNHITPISLILYEINDSLRGQQKRVALRQALSQ 223
            .|:.::..:                    ||.|.|:.           .::..|.||.|..|.::
  Fly   212 LIVEFEPKL--------------------ESFTEHLI-----------DMKTAQSRVYLMYASTE 245

  Fly   224 FAPKKHEEMRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFVLDMVARDFDAGTVTINLDEGAN 288
            .|                  :.|...|...||...|:.|::....:.:.:...|.:.:.|:...:
  Fly   246 DA------------------QVIFRDAGEYNMTGEGHVWIVTEQALFSNNTPDGVLGLQLEHAHS 292

  Fly   289 -----------IAFALNETDPN---------CQDS-LNCTISEISLALVNAISKITVEEESIYGE 332
                       :|.|:.|...|         |.|| :|.   |....|...:....:..|:  |:
  Fly   293 DKGHIRDSVYVLASAIKEMISNETIAEAPKDCGDSAVNW---ESGKRLFQYLKSRNITGET--GQ 352

  Fly   333 ISDEE--------WEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRV-ETAITWGKSQENRK 388
            ::.::        ::.|...:|:|:..:.::..:.::..      .|.|: ::.|.|...|    
  Fly   353 VAFDDNGDRIYAGYDVINIREQQKKHVVGKFSYDSMRAK------MRMRINDSEIIWPGKQ---- 407

  Fly   389 FRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHIEHHFRNITMDILTVHNPPWQI------ 447
             |..|:             |...|.               |.|     :||:...|:..      
  Fly   408 -RRKPE-------------GIMIPT---------------HLR-----LLTIEEKPFVYVRRMGD 438

  Fly   448 -------------LTKNSNGVIVEH--KGIVMEIVKELSRALNFSYYLHEASAWKEEDSLSTSAG 497
                         |..||:....|.  :|..::::.|||:.:||:|            .|:.|..
  Fly   439 DEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTY------------DLALSPD 491

  Fly   498 GNESDELV----GSMTFRIPYR--VVEMVQGNQFFIAAVAATVEDPDQKPF-NYTQPISVQKYSF 555
            |.....::    |:||.|..:.  :.|:|  |:.....||....:|::..: .:::|...|..:.
  Fly   492 GQFGHYILRNNTGAMTLRKEWTGLIGELV--NERADMIVAPLTINPERAEYIEFSKPFKYQGITI 554

  Fly   556 ITRKPDEVSRIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAPL----------KEMRIVGLS 610
            :.:||...|.:..|..||:...|..:|..:.:.|..||.::|.:|.          .|.:.:.||
  Fly   555 LEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLS 619

  Fly   611 TVKSCFWYIFGALLQQG-GMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTF--PKFQPGV 672
               |..|:.:|.||..| |...|.:.|.|::...|....:::|.:|..||.|||..  ||.:   
  Fly   620 ---SAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTK--- 678

  Fly   673 DYLNQLEDHKDIVQYGLRN-----------GTFFERYVQSTTREDFKHYLERAKIYGSAQ----- 721
              |:.:.|.:      |||           |:..:.|        |:..:|.:.:|.:.:     
  Fly   679 --LSGINDAR------LRNTMENLTCATVKGSSVDMY--------FRRQVELSNMYRTMEANNYA 727

  Fly   722 --EEDIEAVKRGERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLV 784
              |:.|:.||:|:.:...|..:     :..:|..|:|......|.|......:.:...|.:...|
  Fly   728 TAEQAIQDVKKGKLMAFIWDSS-----RLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAV 787

  Fly   785 NRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQR----QVTNHKVNMDDMQGCFLVLLLGFTLAL 845
            ...|......||:|:     |......:|...|.    :.|.:.:.:.:|.|.|:::.:|....:
  Fly   788 TLAILEFHESGFMEK-----LDKQWIFHGHVQQNCELFEKTPNTLGLKNMAGVFILVGVGIAGGV 847

  Fly   846 LIVCGEFWYRRFRASRKRR 864
            .::..|..|::.:..:::|
  Fly   848 GLIIIEVIYKKHQVKKQKR 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 73/319 (23%)
Lig_chan 576..836 CDD:306551 64/294 (22%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 63/382 (16%)
ANF_receptor 58..371 CDD:279440 57/342 (17%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 98/466 (21%)
HisJ 451..>558 CDD:223904 26/120 (22%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 34/139 (24%)
Lig_chan 575..838 CDD:278489 64/294 (22%)
CaM_bdg_C0 854..882 CDD:287524 2/13 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462916
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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