DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and gria1b

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:909 Identity:173/909 - (19%)
Similarity:307/909 - (33%) Gaps:301/909 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 VKYFSWNAVRLKKDFLAAITV------TDCENTWNFYKNTQETSILLIAITDSDCPRLPLNRALM 138
            |:::.||.........:.:||      |..|.||      |.|||....:|::         |.:
Zfish   136 VEHYKWNKFVYMYSSDSGLTVLQKILDTAAEKTW------QVTSINFDTLTEA---------AFL 185

  Fly   139 VPI--VENGDEFPQLILDAKVQQILNWKTAVVFVDQTILEENALLVKSIVHESITNHITPISLIL 201
            ..|  ::|..|| ::|||.:::::                           .||.|.|.      
Zfish   186 KAIQDLDNKKEF-KIILDCELERL---------------------------NSILNLIA------ 216

  Fly   202 YEINDSLRGQQKRVALRQALSQFAPKKHEEMRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFV 266
                                   |.||:                       |..:|       ::
Zfish   217 -----------------------AQKKN-----------------------LKNYH-------YI 228

  Fly   267 LDMVARDFDAGTVTINLDE----GANI-AFAL-NETDP----NCQDSLNCTISEIS-----LALV 316
            |      .:.|.:.:||.|    |||: .|.| |.|:|    ..||.|.....::.     |...
Zfish   229 L------ANLGFLDLNLTEFRKGGANVTGFQLMNYTNPTVSRTIQDWLEFDSKDLKSPKRRLKYT 287

  Fly   317 NAIS--KITVEEESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSC-----ARW-- 372
            .|::  .:||              .|..|....||       :..:........|     |.|  
Zfish   288 GALTYDGVTV--------------MATAFQNLRKQ-------RIDISRRGNAGECLANPPAPWGQ 331

  Fly   373 ---------RVETAITWGKSQENRKFRSTPQRDAKNRNF-----EF-----INIGYWTPVLGFVC 418
                     :|:.....|..|.|.|...|        ||     ||     ..:|||.....:|.
Zfish   332 GIDIQRALQQVQFEGLTGHVQFNDKGHRT--------NFTVSVMEFGPSGPKKVGYWNQREKYVS 388

  Fly   419 QELAFPHIEHHF--RNITMDILTVHNPPWQILTKNSNGVI--VEHKGIVMEIVKELSRALNFSYY 479
            .......:...|  :|.|..:.|:...|:.:|.||...::  .:::|..:|:..|:::.:.:||.
Zfish   389 TATYSNMLNETFGLQNRTYVVTTILEAPYVMLKKNHEQLVGNDKYEGYCVELAAEIAKHVGYSYR 453

  Fly   480 LHEASAWKEEDSLSTSAGGNESDELVG--------SMTFRIPYRVVEMVQGNQFFIAAVAATVED 536
            |                      ||||        :.|......|.|:|.| :..:|....|:..
Zfish   454 L----------------------ELVGDGKYGARDAETMMWNGMVGELVYG-KADVAVAPLTITL 495

  Fly   537 PDQKPFNYTQPISVQKYSFITRKPDEVS-RIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAP 600
            ..::..::::|......|.:.:||.:.. .::.|..|...|.|.|::...:..:..|:.::|.:|
Zfish   496 VREEVIDFSKPFMSLGISIMIKKPTKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSP 560

  Fly   601 L----------------------------------------KEMRIVGLSTVKSCFWYIFGALLQ 625
            .                                        |:........:.:..|:..||.:|
Zfish   561 YEWHADDEEETADQQNQNQPPSPEPNQSPNQSQNQREEKQEKQPEHTNEFGIFNSLWFSLGAFMQ 625

  Fly   626 QGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYGLR 690
            ||....|.:.|||:|.|.||...::::::|..||.||||..:....::....|....:|. ||..
Zfish   626 QGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIA-YGTL 689

  Fly   691 NGTFFERYVQSTTREDFKHYLERAKI--------YGSAQEEDI------EAVKRGERINIDWRIN 741
            :|        .:|:|.|:    |:||        |..:.|..:      |.|.|..:....:...
Zfish   690 DG--------GSTKEFFR----RSKIAVFEKMWSYMKSAEPTVFVKTTDEGVVRVRKSKGKYAYL 742

  Fly   742 LQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIER-----WH 801
            |:..:..:.|:.|.|.......:...:...:..|..||..:.||..:..:...|.:::     |:
Zfish   743 LESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWY 807

  Fly   802 QMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQ 865
                 ..|:|.......:.....:::.::.|.|.:|:.|..||:|:...||.|:....||:.:|
Zfish   808 -----DKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALVEFCYKSRIESRRMKQ 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 64/320 (20%)
Lig_chan 576..836 CDD:306551 59/318 (19%)
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 71/387 (18%)
ANF_receptor 41..368 CDD:279440 66/368 (18%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 86/448 (19%)
Lig_chan 536..842 CDD:278489 60/323 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591358
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

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