DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and GluRIIB

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster


Alignment Length:962 Identity:190/962 - (19%)
Similarity:333/962 - (34%) Gaps:256/962 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SILVPTE---ANDFSSFL----SANASLAVVVDHEYMTVH-------------GENILAHF---E 62
            :|...||   |:.||:.|    :.|.:|.:.....|:||.             |..:.|.|   .
  Fly    29 AIFFDTEMKLADAFSAALEEVNAINPALKLDAIKRYVTVDDSIVLQDISCDLIGSGVAAIFGPSS 93

  Fly    63 KILSDVIRENLRNGGINVKYFSWNAVRLKKDFLAAITVTDCENTWNFYKNTQETSILLIAITDSD 127
            |..||::.......||....|.|:..:..::.:                |.|             
  Fly    94 KTNSDIVEVLCNMTGIPHLQFDWHPQQSNRERM----------------NHQ------------- 129

  Fly   128 CPRLPLNRALMVPIVENGDEFPQLILDAKVQQIL-----NWKTAVVFVDQT---ILEENALLVKS 184
               |.:|.|.|           :|.|.|....||     :||:..:..:::   |..::.|..|.
  Fly   130 ---LTVNVAPM-----------ELFLSAAFSDILASKTFDWKSFTIAYERSSHLIRLQHILAWKQ 180

  Fly   185 IVHESITNHITPISLILYEINDSLRGQQKRVALRQALSQFAPKKHEEMRQQFLVI---SAFHEDI 246
            :       |...|.:..:|..|..|...||:              ...|::|:::   |....|:
  Fly   181 L-------HKAGIKMQEFERGDDYRILWKRI--------------NNAREKFVLLDCPSDILVDV 224

  Fly   247 IEIAETLNMFHVGNQWMIFVLD--------MVARDFDAGTVTINLDEGANIAFALNETDPNCQDS 303
            |..:...||....|...:..||        ..:|||......:.:         .....|...|.
  Fly   225 INASIGYNMTGSFNHLFLTNLDTHLSGIDGFYSRDFTVAVAAVRI---------RTYVPPPVHDE 280

  Fly   304 LNCTISEISLALVNAISKITVEEESIYGEISDEEWEAIRFTKQEKQAEILE----YMKEFLKTNA 364
            ::...:.:.....:..|::..:...::       :.|:        .||.:    |:..|     
  Fly   281 IDVFDNSVDTRFSSLGSQLVYDSIVLF-------YNAL--------LEISQRPGFYIPNF----- 325

  Fly   365 KCSSCAR--WRVETAITWGKSQENRKFRSTP---QR-----DAKNRNFEFINIGYWTPVLGFVC- 418
               ||.|  |:....:.....|...|....|   ||     |.:..:|   |:..:.|::..|. 
  Fly   326 ---SCGRGFWQPGPRLVEQMKQITPKMVKPPFKTQRLQINADGQREDF---NLEVYNPIIDRVTH 384

  Fly   419 ---QELAFPHIEHHFRNITM--------------------DILTVHNPPWQILTKNSNGVIVE-- 458
               :|......|....|.|.                    .:.|....|:....:...||..|  
  Fly   385 IWNKEFQLVDFEKLRENSTQALKQKRLQNKEDFSQKPIRYTVATRVGKPYFSWREEPEGVHYEGN 449

  Fly   459 --HKGIVMEIVKELSRALNFSYYLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQ 521
              .:|..::::..|::...|.:.....     .|:...|...| :||..|         ::..:.
  Fly   450 ERFEGYAVDLIYMLAQECKFDFNFEPV-----RDNKYGSYDAN-TDEWDG---------IIRQLI 499

  Fly   522 GNQFFIAAVAATVEDPDQKPFNYTQP-----ISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCL 581
            .|...|.....|:....:...::|.|     ||:..|    ::|...:.||.|..|:..|.|..:
  Fly   500 DNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSY----KEPPPKADIYAFLNPYNAEVWLFV 560

  Fly   582 MGIILLTAPTLYAINRL------APL----KEMRIVGLSTVKSCFWYIFGALLQQGGMYLPTADS 636
            |..:::||..|....|:      .|:    :||....:..:.:..|.:.|::|.||...||....
  Fly   561 MIAMMITAFALIFTGRIDQYEWDQPVENVNREMERQNIWHLSNALWLVLGSMLNQGCDLLPRGLP 625

  Fly   637 GRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYG-LRNG---TFFER 697
            .||:..||||..:::..||...|.||:|..|....:..|:.|.| ::.||:| :|.|   .:|..
  Fly   626 MRLLTAFWWIFALLISQTYIAKLAAFITSSKIAGDIGSLHDLVD-QNKVQFGTIRGGATSVYFSE 689

  Fly   698 YVQSTTREDFKHYLE-RAKIYGSAQEEDIEAVK--RGERINIDWRINLQLIVQRHFEREKECHFA 759
            ...:..|..:...|. :...:....||.::.||  :|....:....|||..|||:      |...
  Fly   690 SNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN------CELT 748

  Fly   760 LGRESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFI------------ERWHQMNLPSAGKCN 812
            ...|||.::...:.||        :|...:|...:|.:            .:|...|   ...|:
  Fly   749 QIGESFGEKHYGIAVP--------LNADFRSNLSVGILRLSERGELFKLRNKWFNSN---ESTCD 802

  Fly   813 GKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLALLIVCGEFWYRRFRASRKRR 864
              |....:.:.:.:||.:.|.|:||::|..:.|:|...||.:...|.|.|.:
  Fly   803 --SNVPTIDDGQFDMDSVGGLFVVLIVGVVVGLVIGVAEFLWHVQRISVKEK 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 68/310 (22%)
Lig_chan 576..836 CDD:306551 69/288 (24%)
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 81/462 (18%)
ANF_receptor 41..378 CDD:279440 74/435 (17%)
PBP2_iGluR_Kainate 422..795 CDD:270432 89/406 (22%)
Lig_chan 555..822 CDD:278489 68/286 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462607
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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