DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and Grik1

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_001104587.1 Gene:Grik1 / 29559 RGDID:2732 Length:949 Species:Rattus norvegicus


Alignment Length:961 Identity:191/961 - (19%)
Similarity:346/961 - (36%) Gaps:281/961 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 IRENLRNGGINVKYFSWNAVRLKKDFLAAITVTDCENTWNFYKNTQET-SILLIAITDS------ 126
            |.|.:.|..:||:..::.           ..||..........||..| .|..|.:.||      
  Rat    42 IFETVENEPVNVEELAFK-----------FAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRR 95

  Fly   127 DCPRLPLN--------------------RALMVPIVENGDEFPQL----------------ILDA 155
            .|.:|.|.                    .||.||.::...:.|.:                |..|
  Rat    96 ACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLYPDYAAISRA 160

  Fly   156 KVQQIL--NWKT-AVVFVDQTILEENALLVKSIVHESITNHITPISLILYEINDSLRGQQKRVAL 217
            .:..:|  |||| .||:.|.|.|.....|:|:....:|                       ::.:
  Rat   161 VLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNI-----------------------KIKI 202

  Fly   218 RQ---ALSQFAP--KKHEEMRQQFLVISAFHEDIIEIAETL-------NMFHVGNQWMIFVLDMV 270
            ||   |.....|  |:.::.::.:::....||...||.:.:       ..:|    :....||:.
  Rat   203 RQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYH----YFFTTLDLF 263

  Fly   271 ARDFDAGTVTINLDEGANIA--FALNETDPNCQDSLNCTISEISLALVNAISK---------ITV 324
            |.|.:     :....|.|:.  ..||..:|:    ::..|.:.|:..:.|..:         :|.
  Rat   264 ALDLE-----LYRYSGVNMTGFRLLNIDNPH----VSSIIEKWSMERLQAPPRPETGLLDGMMTT 319

  Fly   325 EEESIYGE---ISDEEWEAIRFTKQEKQA----------EILEYMKEFLKTNAKCSSCARWRVET 376
            |...:|..   ::.....|.:.|....|.          ..:..:||           |||...|
  Rat   320 EAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKE-----------ARWDGLT 373

  Fly   377 A-ITWGKSQENRK-----FRSTPQRDAKNRNFE--------FINIGYWTPVLGF----------- 416
            . ||:.|:...||     ..|..:...:..:.|        :..||.|....|.           
  Rat   374 GRITFNKTDGLRKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSN 438

  Fly   417 -VCQELAFPHIEHHFRNITMDILTVHNPPWQILTKNSNGVIVEHK--GIVMEIVKELSRALNFSY 478
             :...||         |.|:.:.|:...|:.:..|:...:....:  |..::::||||..|.|.|
  Rat   439 NITDSLA---------NRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLY 494

  Fly   479 YLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPFN 543
            .:......|       ....|:..|..|.:...|.:|.         .:|....|:....:|..:
  Rat   495 DVKLVPDGK-------YGAQNDKGEWNGMVKELIDHRA---------DLAVAPLTITYVREKVID 543

  Fly   544 YTQPISVQKYSFITRKPDEVS-RIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAPLK----- 602
            :::|......|.:.|||:..: .::.|..|.:.:.|..::...|..:..|:.|.|..|.:     
  Rat   544 FSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPH 608

  Fly   603 ----EMRIVGLS-TVKSCFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAF 662
                :..:|..: |:.:.||:..|||:|||...:|.|.|.|:|.|.||...::::::|..||.||
  Rat   609 PCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAF 673

  Fly   663 LTFPKFQPGVDYLNQLEDHKDIVQYG-LRNG---TFFERYVQSTTREDFKHYLERAKIYGSA--- 720
            ||..:.:..:|..:.|.....| :|| :|:|   |||::...||..:.:.....|.:   ||   
  Rat   674 LTVERMESPIDSADDLAKQTKI-EYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQ---SALVK 734

  Fly   721 -QEEDIEAVKRGERINIDWRI-----NLQLIVQRHFEREKECHFA-LGRESFVDEQ--------- 769
             .:|.|:.|     :..|:.:     :::.:.||:      |:.. :|  ..:|.:         
  Rat   735 NSDEGIQRV-----LTTDYALLMESTSIEYVTQRN------CNLTQIG--GLIDSKGYGVGTPIG 786

  Fly   770 --------IAMIVPAQSAYLHLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVN 826
                    ||::...:...||::.            |:|        .:.||...:.......:.
  Rat   787 SPYRDKITIAILQLQEEGKLHMMK------------EKW--------WRGNGCPEEDSKEASALG 831

  Fly   827 MDDMQGCFLVLLLGFTLALLIVCGEFWYR---------RFRASRKRRQFTN 868
            ::::.|.|:||..|..|::.:..|||.|:         :.::||.|..|.|
  Rat   832 VENIGGIFIVLAAGLVLSVFVAIGEFLYKSRKNNDVEQKGKSSRLRFYFRN 882

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 70/284 (25%)
Lig_chan 576..836 CDD:306551 65/300 (22%)
Grik1NP_001104587.1 Periplasmic_Binding_Protein_Type_1 35..430 CDD:299141 82/445 (18%)
ANF_receptor 53..396 CDD:279440 73/400 (18%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 90/421 (21%)
Glutamate binding 531..533 0/1 (0%)
Lig_chan 577..846 CDD:278489 67/305 (22%)