DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and GRIN2D

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_000827.2 Gene:GRIN2D / 2906 HGNCID:4588 Length:1336 Species:Homo sapiens


Alignment Length:424 Identity:85/424 - (20%)
Similarity:178/424 - (41%) Gaps:61/424 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   460 KGIVMEIVKELSRALNFSYYLHEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQ 524
            ||..::|:|.|:..:.|||.|:..:..|.         |.:.|.:...|...:.|:..:|..|  
Human   485 KGFCIDILKRLAHTIGFSYDLYLVTNGKH---------GKKIDGVWNGMIGEVFYQRADMAIG-- 538

  Fly   525 FFIAAVAATVEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCLMGIILLT- 588
                  :.|:.:...:..:::.|......|.:..:.:.......|..|::...| .:|.::.|| 
Human   539 ------SLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVW-VMMFVMCLTV 596

  Fly   589 -APTLYAINRLAPLKEMRIVGLS--------TVKSCFWYIFGALLQQGGMYL--PTADSGRLVVG 642
             |.|::....|:|:...|.:...        |:....|.:: ||:....:.:  |...:.:::|.
Human   597 VAVTVFIFEYLSPVGYNRSLATGKRPGGSTFTIGKSIWLLW-ALVFNNSVPVENPRGTTSKIMVL 660

  Fly   643 FWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHK--------DIVQYG-LRNGTFFERY 698
            .|....::.:.:|..||.||:...::   ||.::.|.|.|        ..:::| :.||: .|:.
Human   661 VWAFFAVIFLASYTANLAAFMIQEEY---VDTVSGLSDRKFQRPQEQYPPLKFGTVPNGS-TEKN 721

  Fly   699 VQSTTREDFKHYLERAKIYGSAQ-EEDIEAVKRGERINIDWRINLQLIVQRHFEREKECHF-ALG 761
            ::| ...|...|:.|   |...: ||.:..:|.|:   :|..|....::.....:::.|.. .:|
Human   722 IRS-NYPDMHSYMVR---YNQPRVEEALTQLKAGK---LDAFIYDAAVLNYMARKDEGCKLVTIG 779

  Fly   762 R-ESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKV 825
            . :.|......:.:...|.:...::..:........||...::.|  :|.|:....  :|.:.|:
Human   780 SGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWL--SGICHNDKI--EVMSSKL 840

  Fly   826 NMDDMQGCFLVLLLGFTLALLIVCGE---FWYRR 856
            ::|:|.|.|.:||:...|:||:...|   :|..|
Human   841 DIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLR 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 50/257 (19%)
Lig_chan 576..836 CDD:306551 56/283 (20%)
GRIN2DNP_000827.2 PBP1_iGluR_NMDA_NR2 49..413 CDD:380601
PBP2_iGluR_NMDA_Nr2 430..830 CDD:270436 71/376 (19%)
Glutamate binding. /evidence=ECO:0000250|UniProtKB:Q00959 539..541 0/1 (0%)
Pore-forming. /evidence=ECO:0000250|UniProtKB:Q00960 631..650 3/19 (16%)
Glutamate binding. /evidence=ECO:0000250|UniProtKB:Q00959 717..718 0/1 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 900..934
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 981..1123
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1225..1336
PDZ-binding. /evidence=ECO:0000250 1334..1336
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155996
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.