DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and GRIA1

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:882 Identity:172/882 - (19%)
Similarity:321/882 - (36%) Gaps:224/882 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 YFSWNAVRLKKDFLAAITVTDCENTWNFYKNTQETSIL---------LIAITDSDCPRLPLNRAL 137
            ::....|.:...|..|:.|  |..|.:|..:|....:|         ||:|.|    .....:.:
Human    98 FYERRTVNMLTSFCGALHV--CFITPSFPVDTSNQFVLQLRPELQDALISIID----HYKWQKFV 156

  Fly   138 MVPIVENGDEFPQLILDAKVQQILNWKTAVVFVDQTILEENALLVKSIVHESITNHITPISLILY 202
            .:...:.|....|.:||...::  ||:...|.:..|..|...:|.:.:                 
Human   157 YIYDADRGLSVLQKVLDTAAEK--NWQVTAVNILTTTEEGYRMLFQDL----------------- 202

  Fly   203 EINDSLRGQQKRVALRQALSQFAPKKHEEMRQQFLVISAFHE-------DIIEIAETLNMFHVGN 260
                                       |:.:::.:|:....|       .||::.:....:|   
Human   203 ---------------------------EKKKERLVVVDCESERLNAILGQIIKLEKNGIGYH--- 237

  Fly   261 QWMIFVLDMVARDFDAGTVTINL----DEGANI-AFAL-NETDPNCQDSLNCTISEISLALVNAI 319
                ::|      .:.|.:.|:|    :.|||: .|.| |.||         ||.          
Human   238 ----YIL------ANLGFMDIDLNKFKESGANVTGFQLVNYTD---------TIP---------- 273

  Fly   320 SKITVE-EESIYGEISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKC-SSCARWRVE------- 375
            :||..: :.|...:.:..:|      |:.|....|.|  :.:|..|:. .|..|.|::       
Human   274 AKIMQQWKNSDARDHTRVDW------KRPKYTSALTY--DGVKVMAEAFQSLRRQRIDISRRGNA 330

  Fly   376 ------TAITWGKS-------------------QENRKFRSTPQRDAKNRNFEFI--------NI 407
                  .|:.||:.                   |.|.|.|.|      |.....|        .|
Human   331 GDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRT------NYTLHVIEMKHDGIRKI 389

  Fly   408 GYWTPVLGFV--CQELAFPHIEHHFRNITMDILTVHNPPWQILTKNSNGV--IVEHKGIVMEIVK 468
            |||.....||  ..:..........:|.|..:.|:...|:.:|.||:|..  ...::|..:|:..
Human   390 GYWNEDDKFVPAATDAQAGGDNSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAA 454

  Fly   469 ELSRALNFSYYLHEASAWKEEDSLSTSAGGNESDE-----LVGSMTFRIPYRVVEMVQGNQFFIA 528
            |:::.:.:||.|...|..|        .|..:.|.     :||           |:|.| :..:|
Human   455 EIAKHVGYSYRLEIVSDGK--------YGARDPDTKAWNGMVG-----------ELVYG-RADVA 499

  Fly   529 AVAATVEDPDQKPFNYTQPISVQKYSFITRKPDEVS-RIYLFTAPFTVETWFCLMGIILLTAPTL 592
            ....|:....::..::::|......|.:.:||.:.. .::.|..|...|.|.|::...:..:..|
Human   500 VAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVL 564

  Fly   593 YAINRLAP-------LKEMRIVGLSTVKSCF------WYIFGALLQQGGMYLPTADSGRLVVGFW 644
            :.::|.:|       .:|.|....|...:.|      |:..||.:|||....|.:.|||:|.|.|
Human   565 FLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVW 629

  Fly   645 WIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYGLRNGT---FFERYVQSTTRED 706
            |...::::::|..||.||||..:....::....|....:|....|..|:   ||.| .:....|.
Human   630 WFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFRR-SKIAVFEK 693

  Fly   707 FKHYLERAK--IYGSAQEEDIEAVKRGERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQ 769
            ...|::.|:  ::....||.:..|::.:.   .:...|:..:..:.|:.|.|.......:...:.
Human   694 MWTYMKSAEPSVFVRTTEEGMIRVRKSKG---KYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKG 755

  Fly   770 IAMIVPAQSAYLHLVNRHIKSMFRMGFIER-----WHQMNLPSAGKCNGKSAQRQVTNHKVNMDD 829
            ..:..|..||..:.||..:..:...|.:::     |:     ..|:|.......:.....:::.:
Human   756 YGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWY-----DKGECGSGGGDSKDKTSALSLSN 815

  Fly   830 MQGCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQF 866
            :.|.|.:|:.|..||:|:...||.|:....|::.:.|
Human   816 VAGVFYILIGGLGLAMLVALIEFCYKSRSESKRMKGF 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 68/291 (23%)
Lig_chan 576..836 CDD:306551 59/282 (21%)
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385 70/398 (18%)
ANF_receptor 47..382 CDD:279440 66/381 (17%)
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 87/409 (21%)
Lig_chan 548..827 CDD:278489 60/287 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155988
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.940

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