DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and gria3a

DIOPT Version :10

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:XP_073805840.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:940 Species:Danio rerio


Alignment Length:891 Identity:149/891 - (16%)
Similarity:292/891 - (32%) Gaps:273/891 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 PQLILDAKVQQIL-----------------NWKTAVVFVD--------QTILEENALLVKSIVHE 188
            |....|..||.:|                 .|:..|...|        |.|:|...:....:...
Zfish   120 PSFPTDTDVQFVLQMRPSLRGALLSLLAHYKWEKFVYLYDTDRGFSILQAIMESAVMNNWQVTAR 184

  Fly   189 SITNHITPISL--ILYEINDSLRGQQKRVALRQALSQFAPKKHEEMRQQFLV------ISAFHED 245
            |:.|.:.|:..  |:.|::   |.|:||                     ||:      |::..|.
Zfish   185 SVGNIVDPLEYRRIIEEMD---RRQEKR---------------------FLIDCEVERINSILEQ 225

  Fly   246 IIEIAETLNMFHVGNQWMIFVLDMVARDFDAGTVTINLDE----GANIAFALNETDPNCQDSLNC 306
            ::...:....:|       ::|      .:.|...::||:    ||||.                
Zfish   226 VVIAGKNSRGYH-------YIL------ANLGFTNMSLDKVFSGGANIT---------------- 261

  Fly   307 TISEISLALVNAISKITVEEESIYGEISDEEW-----EAIRFTKQEKQ------AEILEYMKEFL 360
                 ...::|..|.|..:....:..:.:.|:     ..:::|.....      ||...|::...
Zfish   262 -----GFQIINPDSPIVQQFLQRWERLDEREFPESRSSPLKYTSALTHDAILVIAEAFRYLRRQR 321

  Fly   361 KTNAKCSSCARWRVETAITWGKSQENRKFRSTPQRDAKNRNFEFIN------------------- 406
            ...::..|........|:.|.:..:..:.....|......|.:|.:                   
Zfish   322 VDISRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDSFGRRSNYTVDVYEMKPGGA 386

  Fly   407 --IGYWTPVLGFV-CQELAFPHIEHHFRNITMDILTVHNPPWQILTKN-----SNGVIVEHKGIV 463
              ||||.....|| ..|....:......|.|:.:.|:...|:.:..:|     .|.   .::|..
Zfish   387 RKIGYWNEFEKFVYIVEQQVTNESSSVENRTIVVTTIMEAPYVMYKRNYMQLEGND---RYEGYC 448

  Fly   464 MEIVKELSRALNFSYYLH------------EASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRV 516
            :::..|:::.:...|.|.            |...|               :.:||          
Zfish   449 VDLASEIAKHVGIKYKLSIVADGKYGARDPETKTW---------------NGMVG---------- 488

  Fly   517 VEMVQGNQFFIAAVAATVEDPDQKPFNYTQPISVQKYSFITRKPDEVS-RIYLFTAPFTVETWFC 580
             |:|.| :..||....|:....::..::::|......|.:.:||.:.. .::.|..|...|.|.|
Zfish   489 -ELVYG-RADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMC 551

  Fly   581 LMGIILLTAPTLYAINRLAPLKEMRIVGLSTVK---------------SCFWYIFGALLQQGGMY 630
            ::...:..:..|:.::|.:|. |..:......|               :..|:..||.:|||...
Zfish   552 IVFAYIGVSVVLFLVSRFSPY-EWHLDDNEETKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDI 615

  Fly   631 LPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYGLRNGTFF 695
            .|.:.|||:|.|.||...::::::|..||.||||..:....::....|....:|....|.:|   
Zfish   616 SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSG--- 677

  Fly   696 ERYVQSTTREDFKHYLERAKI--------YGSAQEEDI------EAVKRGERINIDWRINLQLIV 746
                  :|:|.|:    |:||        |..:.|..:      :.|.|..:....:...|:..:
Zfish   678 ------STKEFFR----RSKIAVYEKMWSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTM 732

  Fly   747 QRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIER-----W------ 800
            ..:.|:.|.|.......:...:...:..|..||....||..:..:...|.:::     |      
Zfish   733 NEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRSAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 797

  Fly   801 --------HQMNLPSA-----------------------------------GKCNGKSAQRQVTN 822
                    |:...|:.                                   |:|..|.:..:...
Zfish   798 GSGGGDSKHKARCPTVSLWLTDIRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGTKDSGSKDKT 862

  Fly   823 HKVNMDDMQGCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQFTN 868
            ..:::.::.|.|.:|:.|..||:.:...||.|:..:.:::.:...|
Zfish   863 SALSLSNVAGVFYILVGGLGLAMTVALVEFCYKSHQETKRLKLAKN 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:473866 59/300 (20%)
Lig_chan 574..836 CDD:459656 61/344 (18%)
gria3aXP_073805840.1 None

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