DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and Grin2b

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:905 Identity:166/905 - (18%)
Similarity:334/905 - (36%) Gaps:249/905 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 ITVTDCENTWNFYKNTQETSILLIAITDSDCPRLPLNRALMVPIVENGDEFPQLILDAKVQQILN 162
            :.:.|.....:|:..:....:.|:|:.::| |:..:.|..            .|:.|.|:|    
Mouse    48 VAIKDAHEKDDFHHLSVVPRVELVAMNETD-PKSIITRIC------------DLMSDRKIQ---- 95

  Fly   163 WKTAVVFVDQTILEENALLVKSIVHESITNHITPI-------SLILYEINDSLRGQQKRVALRQA 220
               .|||.|.|..|..|.::..|..::    :|||       |:|:.:.::|....|...::.|.
Mouse    96 ---GVVFADDTDQEAIAQILDFISAQT----LTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQ 153

  Fly   221 LSQFAPKKHEEMRQQFLVISAF---HEDII-EIAETLNMFHVGNQW---MIFVLDMVARDFDAGT 278
            .|.......|.....|.:::.:   ::|.: :|..|:....||  |   .:.:|||         
Mouse   154 ASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVG--WELEEVLLLDM--------- 207

  Fly   279 VTINLDEGANIAFALNETDPNCQDSLN----------CTISEIS--LALVNAI------------ 319
               :||:|          |...|:.|.          ||..|.:  ..:.|::            
Mouse   208 ---SLDDG----------DSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVP 259

  Fly   320 SKITVEEESIYGE-------ISDEEWE-----------AIRFTKQEKQAEILEYMKEFLKTNAKC 366
            |.:..:.:::..|       :|.:||:           ||..|..........::.|   ..:.|
Mouse   260 SLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPE---PKSSC 321

  Fly   367 SSCARWRVETAITWGKSQENRKFRSTPQRDAKNRNFEFINIGY----------------WTPVLG 415
            .:....|:        .|.|...|.......:.||..|...||                |..|..
Mouse   322 YNTHEKRI--------YQSNMLNRYLINVTFEGRNLSFSEDGYQMHPKLVIILLNKERKWERVGK 378

  Fly   416 F--------------VCQELAFPHIEHHFRNITMDILTVHNPPW--------------------- 445
            :              :|.|......:|      :.|:|:...|:                     
Mouse   379 WKDKSLQMKYYVWPRMCPETEEQEDDH------LSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQ 437

  Fly   446 -QILTKNSN----GVIVE-HKGIVMEIVKELSRALNFSYYLHEASAWKEEDSLSTSAGGNESDEL 504
             :|:::|..    |.|.: .||..::|:|::|:::.|:|.|:..:..|....::.:..|     :
Mouse   438 KRIISENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNG-----M 497

  Fly   505 VGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPFNYTQP-----ISVQKYSFITRKPDEVS 564
            :|.:..:..|            :|..:.|:.:...:..:::.|     |||    .::|....||
Mouse   498 IGEVVMKRAY------------MAVGSLTINEERSEVVDFSVPFIETGISV----MVSRSNGTVS 546

  Fly   565 RIYLFTAPFTVETWFCLMGIILL-TAPTLYAINRLAPLKEMRIV-------GLS-TVKSCFWYIF 620
            . ..|..||:.:.|..:..::|: :|..::.....:|:...|.:       |.| |:....|.::
Mouse   547 P-SAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLW 610

  Fly   621 GALLQQG-GMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHK-- 682
            |.:.... .:..|...:.:::|..|....::.:.:|..||.||:...::   ||.::.|.|.|  
Mouse   611 GLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEY---VDQVSGLSDKKFQ 672

  Fly   683 ---DI---VQYG-LRNGTFFERYVQSTTREDFKHYLERAKIYGSAQEEDIE----AVKRGERINI 736
               |.   .::| :.||        ||.|....:|.|.....|...:..::    ::|.|:   :
Mouse   673 RPNDFSPPFRFGTVPNG--------STERNIRNNYAEMHAYMGKFNQRGVDDALLSLKTGK---L 726

  Fly   737 DWRINLQLIVQRHFEREKECHF-ALGR-ESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIER 799
            |..|....::.....|::.|.. .:|. :.|......:.:...|.:...|:..|..:|..|.:|.
Mouse   727 DAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEE 791

  Fly   800 WHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLALL-IVCGEFWYRRFR 858
            ...:.|  .|.|:.:  :.:|.:.::::|:|.|.|.:|.....|:|: .:|...:|.:||
Mouse   792 LEALWL--TGICHNE--KNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEHLFYWQFR 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 58/318 (18%)
Lig_chan 576..836 CDD:306551 55/284 (19%)
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 70/398 (18%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 82/443 (19%)
NMDAR2_C 840..1482 CDD:402274 3/8 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846414
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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