DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and Gria2

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:738 Identity:155/738 - (21%)
Similarity:275/738 - (37%) Gaps:172/738 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 KKHEEMRQQFLVISAFHE-------------DIIEIAETLNMFHVGNQWMIFVLDMVARDFDAGT 278
            ||.|..|..|..:....|             ||::...|:.....|..::|..|...    |...
Mouse   187 KKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT----DGDL 247

  Fly   279 VTINLDEGANIA-FALNETDPNCQDSLNCTISEISLALVNAISKI-----TVEEESIYGEISDEE 337
            :.|... |||:: |.:.:.|    |||              :||.     |:||:...|      
Mouse   248 LKIQFG-GANVSGFQIVDYD----DSL--------------VSKFIERWSTLEEKEYPG------ 287

  Fly   338 WEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVE-------------TAITWGKSQENRKF 389
                ..|...|....|.|....:.|.| ..:..:.|:|             .|:.||:..|..:.
Mouse   288 ----AHTATIKYTSALTYDAVQVMTEA-FRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERA 347

  Fly   390 RSTPQRDAKNRNFEF----------IN-----------IGYWTPV--LGFVCQELAFPHIEHHFR 431
            ....|.:..:.|.:|          ||           ||||:.|  :.....||...:......
Mouse   348 LKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLE 412

  Fly   432 NITMDILTVHNPPWQILTKNSNGVIVE----HKGIVMEIVKELSRALNFSYYLHEASAWKEEDSL 492
            |.|:.:.|:...|:.::.||..  ::|    ::|..:::..|:::...|.|.|......|     
Mouse   413 NKTVVVTTILESPYVMMKKNHE--MLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGK----- 470

  Fly   493 STSAGGNESDE-----LVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPFNYTQPISVQK 552
               .|..::|.     :||           |:|.| :..||....|:....::..::::|.....
Mouse   471 ---YGARDADTKIWNGMVG-----------ELVYG-KADIAIAPLTITLVREEVIDFSKPFMSLG 520

  Fly   553 YSFITRKPDEVS-RIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAPLK---EMRIVGLSTVK 613
            .|.:.:||.:.. .::.|..|...|.|.|::...:..:..|:.::|.:|.:   |....|..|..
Mouse   521 ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQS 585

  Fly   614 S----------CFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKF 668
            |          ..|:..||.:|||....|.:.|||:|.|.||...::::::|..||.||||..:.
Mouse   586 SESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERM 650

  Fly   669 QPGVDYLNQLEDHKDIVQYGLRNGTFFERYVQSTTREDFKHYLERAKI--------YGSAQEEDI 725
            ...::....|....:|....|.:|         :|:|.|:    |:||        |..:.|..:
Mouse   651 VSPIESAEDLSKQTEIAYGTLDSG---------STKEFFR----RSKIAVFDKMWTYMRSAEPSV 702

  Fly   726 ------EAVKRGERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLV 784
                  |.|.|..:....:...|:..:..:.|:.|.|.......:...:...:..|..|:....|
Mouse   703 FVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPV 767

  Fly   785 NRHIKSMFRMGFIER-----WHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLA 844
            |..:..:...|.:::     |:     ..|:|..|.:..:.....:::.::.|.|.:|:.|..||
Mouse   768 NLAVLKLSEQGVLDKLKNKWWY-----DKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLA 827

  Fly   845 LLIVCGEFWYRRFRASRKRRQFT 867
            :|:...||.|:. ||..||.:.|
Mouse   828 MLVALIEFCYKS-RAEAKRMKMT 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 64/290 (22%)
Lig_chan 576..836 CDD:306551 61/291 (21%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 50/244 (20%)
PBP2_iGluR_AMPA 413..794 CDD:270433 86/420 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846438
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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