DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir93a and grin3b

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:XP_017952374.2 Gene:grin3b / 100497172 XenbaseID:XB-GENE-990106 Length:1005 Species:Xenopus tropicalis


Alignment Length:998 Identity:183/998 - (18%)
Similarity:344/998 - (34%) Gaps:285/998 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PSACLLLLA---GLQLSILVP----TEAN--------DFSSFLSANASLAVVVDH---------- 47
            |..|.:|..   .::|..|:|    |:|.        ..:|:|..|.||.||...          
 Frog    24 PQPCRILARIGHTVRLGALLPSYGHTQARIQNVLSRISRTSWLPYNLSLEVVSGAPRDRSPASLT 88

  Fly    48 ----EYMTVHGENILAHFEKILSDVIRENLRNGGINVKYFSWNAVRLKKDFLAAITVTDCENTWN 108
                :.:...|...:..|.:...::::....:..:.:.:.|    .|:::.:..:..   :|.::
 Frog    89 RWLCQVLVAQGIAAVLAFPQAQEELLQLEFLSSFLEIPFIS----ILEQEQIVPLAT---KNPFH 146

  Fly   109 FYKNTQETSILLIAITDSDCPRLPLNRALMVPIVENGD-EFPQLIL-----DAKVQQILNWKTAV 167
            ...:||.:...|:.|..|              :::|.. |...:|.     .|.:|:.|...|.:
 Frog   147 LQMDTQSSVENLMDIFFS--------------VLQNSSWEEVDIITCHPWDSASIQRYLTSNTTL 197

  Fly   168 VFVDQTIL-----EENALLVKSIVH-ESITNHITPISLILYEINDSLRGQQKRVALRQALSQFAP 226
              |.:|||     :|:||:.....| ||:.|...|  ::||..                      
 Frog   198 --VSRTILNIHPVDESALVPFLQQHFESMKNPQFP--MLLYGC---------------------- 236

  Fly   227 KKHEEMRQQFLVISAFHEDIIEIAETLNMFHVGNQWMI--------------------------- 264
                :.|:..||.....:..:|..|    ||    |||                           
 Frog   237 ----DARRSSLVFRVARDCGLEAHE----FH----WMIGHPLNGEEMTTEGMPPGLLAYGEVSRP 289

  Fly   265 ----FVLDMVARDFDAGTVTINLDEGANIA--FALNETDPNCQDSL----NCTISEISLALVNA- 318
                |:.|.|      |.||..:....::.  .||.::..||.|..    ..:.|.:|..|.|. 
 Frog   290 TMEKFIRDAV------GLVTRAISAAVHVRPDLALIQSMVNCNDKQTKQNESSGSYLSRFLANTS 348

  Fly   319 ----ISKITVEEESIYGE------------ISDEEWEAIRFTKQEK--------QAEILEYMKE- 358
                ..:|.|....|:.|            :.|..|..:...:|.|        |:.|.::... 
 Frog   349 FSGQTGQIYVSNNLIHTEHHYRIWSLVRDSLGDPTWVTVGGWRQGKMEVEEGLWQSRIQQWEPAP 413

  Fly   359 --FLKTNAKCSSCARWRVETAITWGKSQENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQEL 421
              |.:|        :.||.|.:       ...|..|.:.||...          .|. |.:|.: 
 Frog   414 GGFART--------KLRVVTLV-------EHPFVFTREVDADGS----------CPA-GQMCLD- 451

  Fly   422 AFPHIEHHFRNITMDILTVHNPPWQILTKNSNGVIVEHK----GIVMEIVKELSRALNFSYYLHE 482
              |...:   :..:|:|      ::.|...:..|.:|:|    |..::::::||..|.|.:.|:.
 Frog   452 --PRTNN---SAVLDVL------FEELNSPNGSVPLEYKTCCYGYCIDLLEKLSEDLRFDFELYI 505

  Fly   483 ASAWKEEDSLSTSAGGNESDE---LVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPFNY 544
            ....|        .|..:.|.   |||.:.....:..|     ..|.|.:..:||.|       :
 Frog   506 VGDGK--------YGARKGDRWTGLVGDLLSGAAHMAV-----TSFSINSARSTVID-------F 550

  Fly   545 TQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCLMGIILLTAPTLYAINRLAPL-------K 602
            |.|........:.|..|..|.|..|..|.....|..:...:.:||..|......:|.       .
 Frog   551 TSPFYSTSLGILVRMRDTASPIGAFMWPLHWSMWVGIFVALHITALFLTFYEWKSPFGMTPHGRN 615

  Fly   603 EMRIVGLST-VKSCFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFP 666
            ..:|...|: :..|:..:||..:..   ..|...:||:::..|.|..::::::|..||.|.:...
 Frog   616 RTKIFSYSSALNLCYAILFGRTVSS---KTPKCCTGRVLMNLWAIFCLLVLSSYTANLAAVMVGD 677

  Fly   667 KFQPGVDYLNQLEDHKDIVQYGLRNGTFFERYVQSTTREDF---KHYLERAKIYGSAQEEDIEAV 728
            |....:..::..:.|..  ..|.|.||.:|...:...::.|   .:|:.:..:  .|..:.:..:
 Frog   678 KTFEALSGIHDPKLHHP--SQGFRFGTVWESSAEQYIKKSFPEMHNYMRKFSV--PATSDGVHLL 738

  Fly   729 KRG---------ERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLV 784
            |..         ::..:|:.:::          :.:|......:.|..|...:.:|..|.....:
 Frog   739 KTDPPTLNAFIMDKALLDYEVSI----------DSDCKLLTIGKPFAIEGYGIGLPQNSPLTSNI 793

  Fly   785 NRHIKSMFRMGFI----ERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLAL 845
            :..|......||:    ::|::| :|    | ||.........::.:....|.|::|.:||..:|
 Frog   794 SEFISRYKSSGFMDTLHDKWYKM-VP----C-GKRVYAVTETLQMGIYHFSGLFVLLCIGFCGSL 852

  Fly   846 LIVCGE--FWYRRFRASRKRRQF 866
            |....|  .::......|:||:|
 Frog   853 LTSLMERVVYHLILPRIRRRRRF 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 57/282 (20%)
Lig_chan 576..836 CDD:306551 47/283 (17%)
grin3bXP_017952374.2 PBP1_iGluR_NMDA_NR3 29..402 CDD:380600 77/437 (18%)
PBP2_iGluR_NMDA_Nr3 418..814 CDD:270438 83/470 (18%)
Lig_chan 582..848 CDD:395014 48/288 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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