DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir93a and grin2b

DIOPT Version :9

Sequence 1:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:906 Identity:169/906 - (18%)
Similarity:329/906 - (36%) Gaps:256/906 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 ETSILLIAITD----------SDCPRLPLN-RALMVPIVENGDE-----FPQLILDAKVQQILNW 163
            :.:::|:..||          .|...||:. |..:|.:.|:..:     ...|:.|.|||     
 Frog    31 DIAVILVGTTDEVAIKDVHEKDDFHHLPVTPRVALVTMNESDPKSIITRICDLMSDKKVQ----- 90

  Fly   164 KTAVVFVDQTILEENALLVKSIVHESITNHITPI-------SLILYEINDSLRGQQKRVALRQAL 221
              .|||.|.|..|..|.::..|..::    :|||       |:|:.:..::           ...
 Frog    91 --GVVFGDDTDQEAIAQILDFISVQT----LTPILGIHGGSSMIMADKEEA-----------SMF 138

  Fly   222 SQFAPKKHEEMRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFVL------------DMVARDF 274
            .||.|    .:.||..|:....|:.              .|.||.:            :.|....
 Frog   139 FQFGP----SIEQQASVMLNIMEEY--------------DWYIFSIVTTYFPGYQDFENKVRSTI 185

  Fly   275 DAGTVTINLDEGANIAFALNETDPNCQDSLN----------CTISEI--------SLALVN---- 317
            :...|...|:|..::..:|::.|...|:.|.          ||..|.        |:.|..    
 Frog   186 ENSFVGWELEEVIHLDMSLDDNDSKIQNQLKKLQSPVILLYCTKEEATYIFEVAHSVGLTGYGYT 250

  Fly   318 --AISKITVEEESIYGE-------ISDEEWE-----------AIRFTKQEKQAEILEYMKEFLKT 362
              ..|.:..:.:::..|       :|.:||:           ||..|   ..:.:|.......::
 Frog   251 WIVPSLVAGDTDTVPAEFPTGLISVSYDEWDYDLPARVRDGIAIITT---AASTMLSEHNSIPQS 312

  Fly   363 NAKCSSCARWRVETAITWGKSQENRKFRSTPQRDAKNRNFEFINIGY----------------WT 411
            .:.|.:....||..|....:...|..|        :.||..|...||                |.
 Frog   313 KSSCYNIQESRVYEAHMLKRYLINVTF--------EGRNLSFSEDGYQMHPKLVIILLNQQRKWE 369

  Fly   412 PVLGFVCQEL-----------AFPHIEHHFRNITMDILTVHNPPW-------------------- 445
            .|..:..:.|           .:|:.|.| ::..:.|:|:...|:                    
 Frog   370 RVGKYKDRSLKMKYYVWPVFELYPNSEEH-KDEHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPC 433

  Fly   446 --QILTKN---SNGVIVEH--KGIVMEIVKELSRALNFSYYLHEASAWKEEDSLSTSAGGNESDE 503
              ||.|:|   ..|..::.  ||..::|:|::::.:.|:|.|:..:..|....::.:..|     
 Frog   434 RKQIRTENRTEEGGNYIKRCCKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKINGTWNG----- 493

  Fly   504 LVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQKPFNYTQP-----ISVQKYSFITRKPDEV 563
            ::|.:..:..|            :|..:.|:.:...:..:::.|     |||    .::|....|
 Frog   494 MIGEVVTKRAY------------MAVGSLTINEERSEVVDFSVPFIETGISV----MVSRSNGTV 542

  Fly   564 SRIYLFTAPFTVETWFCLMGIILL-TAPTLYAINRLAPLKEMRIV-------GLS-TVKSCFWYI 619
            |. ..|..||:.:.|..:..::|: :|..::.....:|:...|.:       |.| |:....|.:
 Frog   543 SP-SAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLL 606

  Fly   620 FGALLQQG-GMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDHK- 682
            :|.:.... .:..|...:.:::|..|....::.:.:|..||.||:...::   ||.::.|.|.| 
 Frog   607 WGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEY---VDQVSGLSDKKF 668

  Fly   683 -------DIVQYG-LRNGTFFERYVQSTTREDFKHYLE----RAKIYGSAQEEDIEAVKRGERIN 735
                   ...::| :.||        ||.|....:|||    ..|....:.::.:.::|.|:   
 Frog   669 QRPNDFSPAFRFGTVPNG--------STERNIRNNYLEMHSYMVKFNQRSVQDALLSLKTGK--- 722

  Fly   736 IDWRINLQLIVQRHFEREKECHF-ALGR-ESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIE 798
            :|..|....::.....|::.|.. .:|. :.|......:.:...|.:...|:..|..:|..|.:|
 Frog   723 LDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFATTGYGIAIQKDSGWKRQVDLAILQLFGDGEME 787

  Fly   799 RWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGCFLVLLLGFTLALLIVCGE---FWYRR 856
            ....:.|  .|.|:.:  :.:|.:.::::|:|.|.|.:|.....|:|:....|   ||..|
 Frog   788 ELEALWL--TGICHNE--KNEVMSSQLDIDNMAGVFYMLAAAMALSLITFIMEHLFFWQLR 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 58/318 (18%)
Lig_chan 576..836 CDD:306551 55/284 (19%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 73/402 (18%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 81/437 (19%)
NMDAR2_C 837..1449 CDD:402274 3/8 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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