DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS30 and fau

DIOPT Version :10

Sequence 1:NP_650922.1 Gene:RpS30 / 42470 FlyBaseID:FBgn0038834 Length:132 Species:Drosophila melanogaster
Sequence 2:NP_001005136.1 Gene:fau / 448719 XenbaseID:XB-GENE-6073800 Length:133 Species:Xenopus tropicalis


Alignment Length:136 Identity:78/136 - (57%)
Similarity:99/136 - (72%) Gaps:8/136 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANE-----TPVTALSS 60
            ||||||| :::..||||...||:.:|:|::.:.|..:|:..:...|..|:.|     ..|..||:
 Frog     1 MQLFVRG-QSLHTLEVSGQETISQIKDQISSLEGIPSEDQVVVLAGSPLSEEHTLQQCGVCDLST 64

  Fly    61 FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGFGRRR 125
              ||:...:|||||||||||||||:||||||.|||||||||||||||:||||||||.|..||:::
 Frog    65 --LDIVARLLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK 127

  Fly   126 GPNANS 131
            ||||||
 Frog   128 GPNANS 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS30NP_650922.1 Ubl1_cv_Nsp3_N-like 1..72 CDD:475130 26/75 (35%)
Ribosomal_S30 73..130 CDD:398432 47/56 (84%)
fauNP_001005136.1 Ubl_FUBI 1..74 CDD:340491 26/75 (35%)
Ribosomal_S30 75..132 CDD:398432 47/56 (84%)

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